Browse Element(s) Details


OsAffx.17979.1.S1_at

Description tigr:9637.m02797
TID=OsAffx.17979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3198010/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31960NANA9+19055825..19059115retrotransposon protein, putative, unclassified
LOC_Os09g31970Os.7150.1.S1_at8/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31970Os.48047.1.S1_at1/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31980OsAffx.17979.1.S1_at10/119+19082298..19084139C1-like domain containing protein
LOC_Os09g31990OsAffx.6464.1.S1_at11/119+19088295..19088984expressed protein
LOC_Os09g32000Os.55250.1.S1_at11/119+19092911..19093754expressed protein
LOC_Os09g32000OsAffx.1250.1.S1_x_at1/119+19092911..19093754expressed protein
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17979.1.S1_at--43--10351NONE
TTCGTCAAACCAGGTGGGTTCCTGC
NONE
OsAffx.17979.1.S1_at--366--7911Chr09:19082800..19082824 (25 bp)
GGTTCCTGCGCTGCAAGTGCGACAT
LOC_Os09g31980
OsAffx.17979.1.S1_at--664--3191Chr09:19082769..19082793 (25 bp)
CAAGTCGGTGAAGGGCTTCTCGTTC
LOC_Os09g31980
OsAffx.17979.1.S1_at--836--2871Chr09:19082759..19082783 (25 bp)
AAGGGCTTCTCGTTCCGGTGCACGT
LOC_Os09g31980
OsAffx.17979.1.S1_at--605--7331Chr09:19082742..19082766 (25 bp)
GTGCACGTCGTGCAGCTTCGCCATG
LOC_Os09g31980
OsAffx.17979.1.S1_at--690--5091Chr09:19082670..19082694 (25 bp)
GCACGAGCACCCTCTGATGCTGGCG
LOC_Os09g31980
OsAffx.17979.1.S1_at--826--6211Chr09:19082625..19082649 (25 bp)
GATGGCGACACCGACGTCGGACGTC
LOC_Os09g31980
OsAffx.17979.1.S1_at--29--5791Chr09:19082574..19082598 (25 bp)
GACGAGCTTCGTGTGCCAGATGTGC
LOC_Os09g31980
OsAffx.17979.1.S1_at--487--5031Chr09:19082526..19082550 (25 bp)
GCAGTACGTGTACCAGTGCATGCCG
LOC_Os09g31980
OsAffx.17979.1.S1_at--77--1131Chr09:19082512..19082536 (25 bp)
AGTGCATGCCGTGCGGGTACTACCT
LOC_Os09g31980
OsAffx.17979.1.S1_at--1070--1051Chr09:19082396..19082420 (25 bp)
AGGGTCACCATCAACGCGCTGTTCA
LOC_Os09g31980
Target Sequence 
TTCGTCAAACCAGGTGGGTTCCTGCGCTGCAAGTGCGACATCTGCGGCAAGTCGGTGAAGGGCTTCTCGTTCCGGTGCAC
GTCGTGCAGCTTCGCCATGCACCCGTGCTGCGCCGCCATGTCGCGGAGGATGGACCTGCCGGTGGCGCACGAGCACCCTC
TGATGCTGGCGCCGTCGCCGCCGACGCCGCCGATGGCGACACCGACGTCGGACGTCGTCGGCGTCGGCGACGGCGGCGTG
GGGACGAGCTTCGTGTGCCAGATGTGCCGGCGGTGCCGGCGGCCGGCGGGGCAGTACGTGTACCAGTGCATGCCGTGCGG
GTACTACCTGCACGCCCGGTGCGCCAAGGACGTGGTGAACGGGCTGTACGTGCACGGCGTCGCGCCGCCGGAGAAGGGGA
GCGCGCTCGCCGCCGTCGCCAGGGTCACCATCAACGCGCTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis