Browse Element(s) Details


OsAffx.1250.1.S1_x_at

Description gb:NM_188690.1
DB_XREF= gi:34904463
GEN=OSJNBa0086P08.11
TID=OsAffx.1250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0086P08.11 (OSJNBa0086P08.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g136703/11hypothetical protein
LOC_Os09g320001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1250.1.S1_x_at--336--9672Chr01:7654118..7654142 (25 bp)
TCACCACCACGGCTAAGGTTGTGTT
NONE
OsAffx.1250.1.S1_x_at--413--1712Chr01:7654123..7654147 (25 bp)
ACCACGGCTAAGGTTGTGTTCCAGG
NONE
OsAffx.1250.1.S1_x_at--1120--9773Chr06:8368494..8368523 (25 bp)
TAAGGTTGTGTTCCAGGACAGCTCC
NONE
OsAffx.1250.1.S1_x_at--549--953Chr06:8368517..8368537 (21 bp)
AGGACAGCTCCATGGCGCAGTTCGT
NONE
OsAffx.1250.1.S1_x_at--423--10611Chr01:7654165..7654186 (22 bp)
TTCGTGGCGCCGACTAGCATGGGAC
NONE
OsAffx.1250.1.S1_x_at--999--4151Chr01:7654172..7654201 (25 bp)
CGCCGACTAGCATGGGACGCGCGTC
NONE
OsAffx.1250.1.S1_x_at--1102--4091Chr01:7654175..7654204 (25 bp)
CGACTAGCATGGGACGCGCGTCGTC
NONE
OsAffx.1250.1.S1_x_at--745--9076Chr09:19093162..19093186 (25 bp)
TGCTTCGTCTGCTGCTCCGACGAGC
LOC_Os09g32000
OsAffx.1250.1.S1_x_at--144--8492Chr01:7654273..7654297 (25 bp)
TGGCGGTGCACGACGCGCTCCAGCT
NONE
OsAffx.1250.1.S1_x_at--68--9232Chr01:7654291..7654315 (25 bp)
TCCAGCTGGGCCAACTCTACTTCGT
NONE
OsAffx.1250.1.S1_x_at--744--1592Chr01:7654294..7654318 (25 bp)
AGCTGGGCCAACTCTACTTCGTGCT
NONE
Target Sequence 
TCACCACCACGGCTAAGGTTGTGTTCCAGGACAGCTCCATGGCGCAGTTCGTGGCGCCGACTAGCATGGGACGCGCGTCG
TCGGCGTCGGCGTCCACCTGCTTCGTCTGCTGCTCCGACGAGCTCCGCTTCGACGCGCCGGCGCGCGCGATGGCGGTGCA
CGACGCGCTCCAGCTGGGCCAACTCTACTTCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1250.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis