Browse Element(s) Details


Os.1228.1.S1_at

Description gb:AK111838.1
DB_XREF= gi:37988501
TID=Os.1228.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DKFZP564O0463 protein (OSJNBa0086P08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136A09, full insert sequence.
FL= gb:AK111838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1373011/11Sof1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1228.1.S1_at--1135--2371Chr01:7682346..7682370 (25 bp)
AAACGCCGCGATTTTACAGGTCTAG
LOC_Os01g13730
Os.1228.1.S1_at--1149--4611Chr01:7682353..7682377 (25 bp)
GCGATTTTACAGGTCTAGCTCAAGA
LOC_Os01g13730
Os.1228.1.S1_at--173--7631Chr01:7682380..7682404 (25 bp)
GGGACATGTCTAATCATCCACCAAA
LOC_Os01g13730
Os.1228.1.S1_at--364--571Chr01:7682395..7682419 (25 bp)
ATCCACCAAACCATTCATCGGAGAG
LOC_Os01g13730
Os.1228.1.S1_at--384--3551Chr01:7682410..7682434 (25 bp)
CATCGGAGAGTGACGTCTGTTGCAA
LOC_Os01g13730
Os.1228.1.S1_at--471--7371Chr01:7682419..7682443 (25 bp)
GTGACGTCTGTTGCAAACAGTGTTT
LOC_Os01g13730
Os.1228.1.S1_at--757--3451Chr01:7682436..7682460 (25 bp)
CAGTGTTTAGAAAGCAGCCCCAGCA
LOC_Os01g13730
Os.1228.1.S1_at--5--811Chr01:7682482..7682506 (25 bp)
ATGGTTCATCAGTTTATAAAGGGCT
LOC_Os01g13730
Os.1228.1.S1_at--1141--2871Chr01:7682500..7682524 (25 bp)
AAGGGCTGAAATTTTTGCTTCTGCT
LOC_Os01g13730
Os.1228.1.S1_at--636--4911Chr01:7682516..7682540 (25 bp)
GCTTCTGCTCAATTTGTTGTATCGT
LOC_Os01g13730
Os.1228.1.S1_at--825--211Chr01:7682527..7682551 (25 bp)
ATTTGTTGTATCGTTTTGCTTGTAA
LOC_Os01g13730
Target Sequence 
AAACGCCGCGATTTTACAGGTCTAGCTCAAGACGGGGACATGTCTAATCATCCACCAAACCATTCATCGGAGAGTGACGT
CTGTTGCAAACAGTGTTTAGAAAGCAGCCCCAGCAGCAGCAGAAATCGAAGGGTCTATGGTTCATCAGTTTATAAAGGGC
TGAAATTTTTGCTTCTGCTCAATTTGTTGTATCGTTTTGCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis