Browse Element(s) Details


Os.1228.1.S1_a_at

Description gb:AK111838.1
DB_XREF= gi:37988501
TID=Os.1228.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DKFZP564O0463 protein (OSJNBa0086P08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136A09, full insert sequence.
FL= gb:AK111838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1373011/11Sof1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1228.1.S1_a_at--117--9571Chr01:7681944..7681967 (24 bp)
TCTTCTTCCAAGAGAACGCAGAAAA
LOC_Os01g13730
Os.1228.1.S1_a_at--815--5951Chr01:7681954..7681978 (25 bp)
GAGAACGCAGAAAACAAGAATACCT
LOC_Os01g13730
Os.1228.1.S1_a_at--637--2211Chr01:7681967..7681991 (25 bp)
ACAAGAATACCTAGATGCTGTCAAG
LOC_Os01g13730
Os.1228.1.S1_a_at--189--10031Chr01:7681978..7682002 (25 bp)
TAGATGCTGTCAAGGAGCGGTATAA
LOC_Os01g13730
Os.1228.1.S1_a_at--524--971Chr01:7681990..7682014 (25 bp)
AGGAGCGGTATAAGCACCTTCCCGA
LOC_Os01g13730
Os.1228.1.S1_a_at--780--7851Chr01:7681996..7682020 (25 bp)
GGTATAAGCACCTTCCCGAAGTCAA
LOC_Os01g13730
Os.1228.1.S1_a_at--169--1511Chr01:7682002..7682026 (25 bp)
AGCACCTTCCCGAAGTCAAGCGGAT
LOC_Os01g13730
Os.1228.1.S1_a_at--72--3651Chr01:7682007..7682031 (25 bp)
CTTCCCGAAGTCAAGCGGATTGTGA
LOC_Os01g13730
Os.1228.1.S1_a_at--189--4991Chr01:7682265..7682289 (25 bp)
GCATGCCTGTGCAGCCCTTCAGGAA
LOC_Os01g13730
Os.1228.1.S1_a_at--1119--4471Chr01:7682269..7682293 (25 bp)
GCCTGTGCAGCCCTTCAGGAAGAGA
LOC_Os01g13730
Os.1228.1.S1_a_at--1093--7331Chr01:7682273..7682297 (25 bp)
GTGCAGCCCTTCAGGAAGAGAAGAA
LOC_Os01g13730
Target Sequence 
TCTTCTTCCAAGAGAACGCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTTCCCGAAGTCAAGC
GGATTGTGAGNCATAGGCACTTNACCTAANCCAATCTACNAAGGCGNCCNAACTTAAGGCGAACNATGNATTGAAGCAGA
AANCCGTAAAGAAGAAAGGAGGCGTGCGCACAGTGNCCCCCGGGAGCATGCCTGTGCAGCCCTTCAGGAAGAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1228.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis