Browse Element(s) Details


Os.1229.3.S1_x_at

Description gb:NM_188697.1
DB_XREF= gi:34904477
GEN=OSJNBa0086P08.18
TID=Os.1229.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086P08.18 (OSJNBa0086P08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0086P08.18 (OSJNBa0086P08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1374010/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13760Os.1233.1.S1_at11/111+7709161..7714533DnaJ domain containing protein, expressed
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1229.3.S1_x_at--967--7471Chr01:7686086..7686110 (25 bp)
GTGGGTCATGCCGACCATCGGTTTC
LOC_Os01g13740
Os.1229.3.S1_x_at--972--5811Chr01:7685821..7685845 (25 bp)
GACCCGGCGGCGTACTGGCAGCAAC
LOC_Os01g13740
Os.1229.3.S1_x_at--862--2511Chr01:7685026..7685047 (22 bp)
AACTTGCAGAGGTTTCCTGTACCGC
LOC_Os01g13740
Os.1229.3.S1_x_at--883--3871Chr01:7685010..7685034 (25 bp)
CTGTACCGCCGGTGCCTGGAATGGT
LOC_Os01g13740
Os.1229.3.S1_x_at--213--2971Chr01:7684991..7685015 (25 bp)
AATGGTGCCGCACCCCATGTACAGA
LOC_Os01g13740
Os.1229.3.S1_x_at--239--8211Chr01:7684938..7684962 (25 bp)
GGAATAAACTCGCTGCCTTGCAGCT
LOC_Os01g13740
Os.1229.3.S1_x_at--356--9191Chr01:7684925..7684949 (25 bp)
TGCCTTGCAGCTTCAGCTTGATGCC
LOC_Os01g13740
Os.1229.3.S1_x_at--874--8851NONE
TGATGCCCACCCGTCTAAGGAGAGC
NONE
Os.1229.3.S1_x_at--428--1371Chr01:7684229..7684253 (25 bp)
AGAGCATAGACGCAGCCATCGGAGA
LOC_Os01g13740
Os.1229.3.S1_x_at--776--10351Chr01:7684202..7684226 (25 bp)
TTTTAGTGAAGCCATGGCTGCCGCT
LOC_Os01g13740
Os.1229.3.S1_x_at--355--1631Chr01:7684146..7684170 (25 bp)
AGCGTCATGTCTGAGCTGCACAAGC
LOC_Os01g13740
Target Sequence 
GTGGGTCATGCCGACCATCGGTTTCCCTCCGCCGCACGCGGCGGCGATGGTGCCTCCCCCGCCGCACCCTCCACCGTTCT
GCCGGCCGCCGCTGCACGTGTGGGGCCACCCGACCGCCGGCGTCGAGCCGACCACCGCGGCGGCGCCACCACCACCCTCG
CCGCACGCGCAGCCGCCGTTGCTGCCCGTCTGGCCGCGCCACCTGGCGCCGCCGCCGCCGCCGCTGCCGGCGGCGTGGGC
GCACGGCCACCAGCCGGCGCCGGTGGACCCGGCGGCGTACTGGCAGCAACAGTATAACTTGCAGAGGTTTCCTGTACCGC
CGGTGCCTGGAATGGTGCCGCACCCCATGTACAGACCGATACCGCCGCCGTCACCGCCGCAGGGGAATAAACTCGCTGCC
TTGCAGCTTCAGCTTGATGCCCACCCGTCTAAGGAGAGCATAGACGCAGCCATCGGAGATGTTTTAGTGAAGCCATGGCT
GCCGCTTCCCCTCGGCCTCAAGCCACCGTCGCTGGACAGCGTCATGTCTGAGCTGCACAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1229.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis