Browse Element(s) Details


Os.1224.1.S1_at

Description gb:AK067076.1
DB_XREF= gi:32977094
TID=Os.1224.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.1224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative branched-chain amino acid aminotransferase protein (OSJNBa0086P08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093D15, full insert sequence.
FL= gb:AK067076.1 gb:AK104302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1369011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046654biological_processtetrahydrofolate biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0008696molecular_function4-amino-4-deoxychorismate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1224.1.S1_at--1028--9371Chr01:7664283..7664307 (25 bp)
TCGAGTGGGACGACCAGCTCATCGG
LOC_Os01g13690
Os.1224.1.S1_at--972--8711Chr01:7664437..7664461 (25 bp)
TGTCGGATCTGCTCTGGGAGGACAT
LOC_Os01g13690
Os.1224.1.S1_at--152--6391Chr01:7664480..7664504 (25 bp)
GATCGCAGTCCCGTACAAGTGATGG
LOC_Os01g13690
Os.1224.1.S1_at--514--4791Chr01:7664524..7664548 (25 bp)
GCTCCTCGGGCGTACGTCAGAAAGA
LOC_Os01g13690
Os.1224.1.S1_at--979--7451Chr01:7664550..7664574 (25 bp)
GTGTGCTACCGACGTGTGGATTCAT
LOC_Os01g13690
Os.1224.1.S1_at--351--2191Chr01:7664575..7664599 (25 bp)
GACGGTAAGCTTCACCTGTTAGGGA
LOC_Os01g13690
Os.1224.1.S1_at--438--8771Chr01:7664591..7664615 (25 bp)
TGTTAGGGATTCACGTCTCTTCGAC
LOC_Os01g13690
Os.1224.1.S1_at--506--1331Chr01:7664624..7664648 (25 bp)
AGAGGAGCTACGTCCATCGGAGATA
LOC_Os01g13690
Os.1224.1.S1_at--778--5151Chr01:7664660..7664684 (25 bp)
GCAACGTGCCGAGTATATATGTGTA
LOC_Os01g13690
Os.1224.1.S1_at--271--651Chr01:7664720..7664744 (25 bp)
ATGCAGTATCGTGTCGTTTCGTTTC
LOC_Os01g13690
Os.1224.1.S1_at--42--3031Chr01:7664805..7664829 (25 bp)
AATCCTTGTATTTTGCGGTGTATCA
LOC_Os01g13690
Target Sequence 
TCGAGTGGGACGACCAGCTCATCGGCGACGGGAAGGTGGGGAAGACGATGATGGCGCTGTCGGATCTGCTCTGGGAGGAC
ATGAAATCGGGGCCGGACAGGATCGCAGTCCCGTACAAGTGATGGATTATTGGAGTTGGGTGAGGCTCCTCGGGCGTACG
TCAGAAAGAGGTGTGCTACCGACGTGTGGATTCATGACGGTAAGCTTCACCTGTTAGGGATTCACGTCTCTTCGACTTTA
TATGAGAGGAGCTACGTCCATCGGAGATAGGAGGAGAAGGGCAACGTGCCGAGTATATATGTGTAGTGTACGTACGCGTG
AGCGAGCTGAGATGGATATGATGCAGTATCGTGTCGTTTCGTTTCGTTTCTCCTTGTGTTCATGTGTGGTTTGTATGGNT
TTTTATCTGTACGTGTCGTCAANGTAATCCTTGTATTTTGCGGTGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis