Browse Element(s) Details


Os.1228.2.S1_x_at

Description gb:NM_188696.1
DB_XREF= gi:34904475
GEN=OSJNBa0086P08.17
TID=Os.1228.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1228 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DKFZP564O0463 protein (OSJNBa0086P08.17), mRNA.
PROD=putative DKFZP564O0463 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1373010/11Sof1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1228.2.S1_x_at--80--2231Chr01:7680139..7680161 (23 bp)
ACAAGGGCCATGTTTCAGCAGTGAT
LOC_Os01g13730
Os.1228.2.S1_x_at--78--3611Chr01:7680608..7680632 (25 bp)
CATTGATTATTCACCAACAGGGCGT
LOC_Os01g13730
Os.1228.2.S1_x_at--995--5491Chr01:7680658..7680777 (25 bp)
GAACAGTGCGGATCTTCCAATATAA
LOC_Os01g13730
Os.1228.2.S1_x_at--903--2631Chr01:7681087..7681111 (25 bp)
AACCTATTTGGTTTCTGGCAGTGAT
LOC_Os01g13730
Os.1228.2.S1_x_at--9--5211Chr01:7681117..7681141 (25 bp)
GAATCTTCGGCTGTGGAAGTCCAAA
LOC_Os01g13730
Os.1228.2.S1_x_at--728--5491NONE
GAACAGTTGGGAGTTCTTCTTCCAA
NONE
Os.1228.2.S1_x_at--523--971Chr01:7681990..7682014 (25 bp)
AGGAGCGGTATAAGCACCTTCCCGA
LOC_Os01g13730
Os.1228.2.S1_x_at--306--6611Chr01:7682024..7682170 (25 bp)
GATTGTGAGGCATAGGCACTTACCT
LOC_Os01g13730
Os.1228.2.S1_x_at--693--931Chr01:7682159..7682183 (25 bp)
AGGCACTTACCTAAGCCAATCTACA
LOC_Os01g13730
Os.1228.2.S1_x_at--353--1691Chr01:7682172..7682196 (25 bp)
AGCCAATCTACAAGGCGGCCAACTT
LOC_Os01g13730
Os.1228.2.S1_x_at--504--891Chr01:7682184..7682208 (25 bp)
AGGCGGCCAACTTAAGGCGAACGAT
LOC_Os01g13730
Target Sequence 
ACAAGGGCCATGTTTCAGCAGTGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGA
ACAGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTTGTGT
GAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAG
AACAGTTGGGAGTTCTTCTTCCAAGAGAACGCAGAAAACAAGAATACCTAGATGCTGTCAAGGAGCGGTATAAGCACCTT
CCCGAAGTCAAGCGGATTGTGAGGCATAGGCACTTACCTAAGCCAATCTACAAGGCGGCCAACTTAAGGCGAACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1228.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis