Browse Element(s) Details


Os.36566.2.S1_at

Description gb:AK062403.1
DB_XREF= gi:32972421
TID=Os.36566.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086P08.10 (OSJNBa0086P08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E05, full insert sequence.
FL= gb:AK062403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g136608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36566.2.S1_at--90--3891NONE
CTGTGAGATCGATGGATTCCCTTTT
NONE
Os.36566.2.S1_at--422--6391NONE
GATCGATGGATTCCCTTTTTTAATT
NONE
Os.36566.2.S1_at--215--10331Chr01:7649920..7649944 (25 bp)
TTTAATTTCTAGCAGTCCCGCCAAC
LOC_Os01g13660
Os.36566.2.S1_at--489--311Chr01:7649882..7649906 (25 bp)
ATACCACTGCACTCCTGTATGGTCT
LOC_Os01g13660
Os.36566.2.S1_at--604--4271Chr01:7649869..7649893 (25 bp)
CCTGTATGGTCTACCCGTTGTCTCC
LOC_Os01g13660
Os.36566.2.S1_at--437--9531Chr01:7649860..7649884 (25 bp)
TCTACCCGTTGTCTCCCCTGTTTAT
LOC_Os01g13660
Os.36566.2.S1_at--175--2513Chr12:4115340..4115364 (25 bp)
AACATGATTGTTATTGCGATTTATT
NONE
Os.36566.2.S1_at--76--8793Chr12:4115348..4115373 (25 bp)
TGTTATTGCGATTTATTTTTACTTT
NONE
Os.36566.2.S1_at--542--2431Chr01:7649777..7649801 (25 bp)
AAAAGTCATGCCAATCTATGCTGCT
LOC_Os01g13660
Os.36566.2.S1_at--786--7111Chr01:7649773..7649797 (25 bp)
GTCATGCCAATCTATGCTGCTTAAC
LOC_Os01g13660
Os.36566.2.S1_at--1103--9191Chr01:7649769..7649793 (25 bp)
TGCCAATCTATGCTGCTTAACGTCC
NONE
Target Sequence 
CTGTGAGATCGATGGATTCCCTTTTTTAATTTCTAGCAGTCCCGCCAACCGCTGCTGGCTCCATACCACTGCACTCCTGT
ATGGTCTACCCGTTGTCTCCCCTGTTTATTTTCATTGAGATTTTAAAAATAAAACATGATTGTTATTGCGATTTATTTTT
ACTTTATAAAAGTCATGCCAATCTATGCTGCTTAACGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36566.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis