Browse Element(s) Details


Os.36566.1.S1_s_at

Description gb:AK063106.1
DB_XREF= gi:32973124
TID=Os.36566.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086P08.10 (OSJNBa0086P08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D02, full insert sequence.
FL= gb:AK063106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1366011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36566.1.S1_s_at--943--5471Chr01:7652851..7652871 (21 bp)
GAACTTCTGTGAGATCGATGGGCCT
LOC_Os01g13660
Os.36566.1.S1_s_at--1158--4051Chr01:7651035..7651055 (21 bp)
CGATGGGCCTGGAATGCGATGCACC
LOC_Os01g13660
Os.36566.1.S1_s_at--186--5271Chr01:7651024..7651048 (25 bp)
GAATGCGATGCACCCGTAGATGATG
LOC_Os01g13660
Os.36566.1.S1_s_at--513--4631Chr01:7651020..7651044 (25 bp)
GCGATGCACCCGTAGATGATGAAGC
LOC_Os01g13660
Os.36566.1.S1_s_at--733--4331Chr01:7650930..7650954 (25 bp)
CCATGTAAATTTGGGCTTGAAAGTT
LOC_Os01g13660
Os.36566.1.S1_s_at--575--2831Chr01:7650910..7650934 (25 bp)
AAGTTTGATGATAACCACAACGATG
LOC_Os01g13660
Os.36566.1.S1_s_at--129--9791Chr01:7650899..7650923 (25 bp)
TAACCACAACGATGTACTGCACCGG
LOC_Os01g13660
Os.36566.1.S1_s_at--272--2591Chr01:7650892..7650916 (25 bp)
AACGATGTACTGCACCGGAGCACAT
LOC_Os01g13660
Os.36566.1.S1_s_at--1094--9911Chr01:7650885..7650909 (25 bp)
TACTGCACCGGAGCACATTTGGTAT
LOC_Os01g13660
Os.36566.1.S1_s_at--110--5951Chr01:7650875..7650899 (25 bp)
GAGCACATTTGGTATGATGCATGAT
LOC_Os01g13660
Os.36566.1.S1_s_at--946--6911Chr01:7650864..7650888 (25 bp)
GTATGATGCATGATGGAGCTATGTA
LOC_Os01g13660
Target Sequence 
GAACTTCTGTGAGATCGATGGGCCTGGAATGCGATGCACCCGTAGATGATGAAGCAAACTGTTCCTCTTGTTAAAATCCT
TAGTAAACNTTATTGTGGTTTTTAAAGTTTGCCTTTCCATCCATGTAAATTTGGGCTTGAAAGTTTGATGATAACCACAA
CGATGTACTGCACCGGAGCACATTTGGTATGATGCATGATGGAGCTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36566.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis