Browse Element(s) Details


Os.1227.2.S1_x_at

Description gb:AK063492.1
DB_XREF= gi:32973510
TID=Os.1227.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086P08.16 (OSJNBa0086P08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C11, full insert sequence.
FL= gb:AK063492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1372010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1227.2.S1_x_at--967--1031Chr01:7675395..7675419 (25 bp)
AGGTCGCCTGTTGAGCTGAGTGTAT
LOC_Os01g13720
Os.1227.2.S1_x_at--678--8891Chr01:7675379..7675403 (25 bp)
TGAGTGTATGCGTGGAGTCCCTGCT
LOC_Os01g13720
Os.1227.2.S1_x_at--381--3791NONE
CTCGGGTGGCTCACGGAAGCTGAAA
NONE
Os.1227.2.S1_x_at--383--6251Chr01:7674303..7674327 (25 bp)
GATGGATTATGCTGAATTACTATTC
LOC_Os01g13720
Os.1227.2.S1_x_at--433--9591Chr01:7674280..7674304 (25 bp)
TCTTGGACAACAGCTGATACTGATG
LOC_Os01g13720
Os.1227.2.S1_x_at--823--8871Chr01:7674260..7674284 (25 bp)
TGATGGAGTATGACGGCAGCCTGCT
LOC_Os01g13720
Os.1227.2.S1_x_at--1024--5071Chr01:7674245..7674269 (25 bp)
GCAGCCTGCTTCTGGAACCAGGAGA
LOC_Os01g13720
Os.1227.2.S1_x_at--424--1191Chr01:7674218..7674242 (25 bp)
AGTAGTCCGTCAAGTTCATTTGTGA
LOC_Os01g13720
Os.1227.2.S1_x_at--581--6731Chr01:7674205..7674229 (25 bp)
GTTCATTTGTGAGCCTGCAGAATTA
LOC_Os01g13720
Os.1227.2.S1_x_at--300--8571Chr01:7674113..7674137 (25 bp)
TGGATATTGCTCAGAACCCTTTCTC
LOC_Os01g13720
Os.1227.2.S1_x_at--69--3771Chr01:7674087..7674111 (25 bp)
CTCTTCATTGACCAGATCCTTTTGT
LOC_Os01g13720
Target Sequence 
AGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGANCGT
CCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTT
GGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTNAGTAGTCCGTCAAGTTCATTT
GTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACT
ACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1227.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis