Browse Element(s) Details


Os.43357.1.S1_at

Description gb:AK121040.1
DB_XREF= gi:37990663
TID=Os.43357.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086P08.15 (OSJNBa0086P08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051H23, full insert sequence.
FL= gb:AK121040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1371011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43357.1.S1_at--539--9411Chr01:7672727..7672751 (25 bp)
TCGTCGGGCCGACGTTCGCCATCGA
LOC_Os01g13710
Os.43357.1.S1_at--620--631Chr01:7672888..7672912 (25 bp)
ATGCTCAAGGTGCAGCCGCCCATCT
LOC_Os01g13710
Os.43357.1.S1_at--788--8991Chr01:7672916..7672940 (25 bp)
TGAAGTTCCTCTCCAGAAGCCAGAT
LOC_Os01g13710
Os.43357.1.S1_at--301--3971Chr01:7672991..7673015 (25 bp)
CGGTGACGCTGACGCATCATCATCA
LOC_Os01g13710
Os.43357.1.S1_at--544--3911Chr01:7673032..7673056 (25 bp)
CTGGAGTACTCATCATCAGCTTGTA
LOC_Os01g13710
Os.43357.1.S1_at--854--3551Chr01:7673045..7673069 (25 bp)
CATCAGCTTGTAAATTGGCGGGAAT
LOC_Os01g13710
Os.43357.1.S1_at--451--8351Chr01:7673061..7673085 (25 bp)
GGCGGGAATGATCATATTGTTTTGA
LOC_Os01g13710
Os.43357.1.S1_at--182--6091Chr01:7673091..7673115 (25 bp)
GAGTAGGAGCACTATGCCTGCTGAA
LOC_Os01g13710
Os.43357.1.S1_at--983--3692Chr01:7673102..7673126 (25 bp)
CTATGCCTGCTGAAAAGTGAGAAGT
LOC_Os01g13710
Os.43357.1.S1_at--415--5531Chr01:7673127..7673151 (25 bp)
GAAAACTGCTGGTGTTGAACAAATC
LOC_Os01g13710
Os.43357.1.S1_at--271--9751Chr01:7673173..7673197 (25 bp)
TAATATGGACCAGGGACTACCTATA
LOC_Os01g13710
Target Sequence 
TCGTCGGGCCGACGTTCGCCATCGACATGTGCGTCGGCAGCCTGCTGCTGATGGCGTGGCGGAGGGCGGACAGGCAGGGC
GCCGCGACGCTGGCCGTCGTGGTGGCGTCCGGGCTCATCTGCGGAGAAGGGCTGTGGACGCTGCCGTCGGCGGTGCTCGC
CATGCTCAAGGTGCAGCCGCCCATCTGCATGAAGTTCCTCTCCAGAAGCCAGATCCAGGAGGTGCGGCAGCACTTCGTGC
TCGGCGCCGCGGATATCCAGCCCGCGGTGACGCTGACGCATCATCATCATCAATGATATAATATACTGGAGTACTCATCA
TCAGCTTGTAAATTGGCGGGAATGATCATATTGTTTTGAATTGTGAGTAGGAGCACTATGCCTGCTGAAAAGTGAGAAGT
GAAAACTGCTGGTGTTGAACAAATCAAGCACATGAAAACGAAAACCTAATATGGACCAGGGACTACCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis