Browse Element(s) Details


Os.36749.2.A1_at

Description gb:NM_188691.1
DB_XREF= gi:34904465
GEN=OSJNBa0086P08.12
TID=Os.36749.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086P08.12 (OSJNBa0086P08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0086P08.12 (OSJNBa0086P08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g136804/11hypothetical protein
LOC_Os11g196901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g070701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed
LOC_Os01g13720Os.1227.2.S1_x_at10/111+7673995..7675669expressed protein
LOC_Os01g13730Os.1228.2.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.1.S1_a_at11/111+7675832..7682720Sof1-like domain containing protein, expressed
LOC_Os01g13730Os.1228.2.S1_x_at10/111+7675832..7682720Sof1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36749.2.A1_at--169--7551Chr01:7660497..7660521 (25 bp)
GTGGCGCGCGGCATATACGTACGTT
NONE
Os.36749.2.A1_at--284--4571Chr01:7660494..7660518 (25 bp)
GCGCGCGGCATATACGTACGTTGTG
NONE
Os.36749.2.A1_at--655--10171Chr01:7660484..7660508 (25 bp)
TATACGTACGTTGTGCAGGGATGGA
NONE
Os.36749.2.A1_at--109--3991Chr01:7658649..7658673 (25 bp)
CGGGCGGCTTAGACGGCCACACACG
NONE
Os.36749.2.A1_at--252--7591Chr01:7658397..7658420 (24 bp)
GGGCTCAAGTTAGTTACCGTGCAAC
NONE
Os.36749.2.A1_at--514--1211Chr01:7658071..7658413 (25 bp)
AGTTAGTTACCGTGCAACTCTGCGA
NONE
Os.36749.2.A1_at--337--10471Chr01:7658065..7658407 (25 bp)
TTACCGTGCAACTCTGCGACGACCG
NONE
Os.36749.2.A1_at--766--2112Chr11:11315393..11315417 (25 bp)
ACATGGTGAGCGCTGGCGCGGTGCA
LOC_Os11g19690
Os.36749.2.A1_at--193--3292Chr03:3586880..3586904 (25 bp)
CAAAGCCTTGAAGTACAGACAACAG
LOC_Os03g07070
Os.36749.2.A1_at--27--2211Chr01:7657893..7657917 (25 bp)
ACAACAGATCAATCGGCCGCTGTGC
LOC_Os01g13680
Os.36749.2.A1_at--399--371Chr01:7657886..7657910 (25 bp)
ATCAATCGGCCGCTGTGCGCCGGCA
LOC_Os01g13680
Target Sequence 
GTGGCGCGCGGCATATACGTACGTTGTGCAGGGATGGAGCATTGGGCGGGAGCAGGCAGAGCTGCGGAGGGCGGCGGGCG
GCTTAGACGGCCACACACGCTTGCTCCTGCGTCGCCGCCGCCGCCGCCCTCCTCGACGGCGTCCTCGGTCGCTGTCACCG
CCACCGAGTGCGGGTGCCTGGACGACGTGAACGGGTACGCGGTACAGTTCAACGCCGCCGCCAAGAACCTCCTCGAGTGG
CTCAACGCGAAGCTCCCCGGCGCGAGCATTTCCCTCGCCGACTGCTACTCCATCGTCATGGAGCTCATCGAGCACCCGCA
GAAGTACGGGCTCAAGTTAGTTACCGTGCAACTCTGCGACGACCGCACGACGTTCGTGTTCTGGGACGCCTACCACACCT
CCGACGCCACCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAAC
GTCACCACCGCCTCCAAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36749.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis