Browse Element(s) Details


Os.48047.1.S1_at

Description gb:AK106291.1
DB_XREF= gi:32991500
TID=Os.48047.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B03, full insert sequence.
FL= gb:AK106291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3495011/11expressed protein
LOC_Os09g319701/113-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein
LOC_Os11g34920Os.52499.1.S1_at11/1111+19959841..19963404stripe rust resistance protein Yr10, putative, expressed
LOC_Os11g34930NANA11+19965420..19969008retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g34940Os.25955.1.S1_at11/1111+19976907..19977601expressed protein
LOC_Os11g34950Os.48047.1.S1_at11/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.31302.1.S1_at2/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.30627.1.S1_at1/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.22569.1.S1_x_at1/1111+19981416..19986769expressed protein
LOC_Os11g34960NANA11+19987973..19988739hypothetical protein
LOC_Os11g34970OsAffx.7295.1.S1_at11/1111+19995278..19999146NB-ARC domain containing protein, expressed
LOC_Os11g34980OsAffx.31302.1.S1_at11/1111+19999900..20001521hypothetical protein
LOC_Os11g34990OsAffx.19164.1.S1_at11/1111+20004066..20004447hypothetical protein
LOC_Os11g35000OsAffx.7296.1.S1_at10/1111+20006774..20007202hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005792cellular_componentmicrosome
GO:0016020cellular_componentmembrane
GO:0042282molecular_functionhydroxymethylglutaryl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48047.1.S1_at--543--2211Chr11:19981890..19981914 (25 bp)
ACAAGGCTCAGACCTATTACTGGAG
LOC_Os11g34950
Os.48047.1.S1_at--314--151Chr11:19981875..19981899 (25 bp)
ATTACTGGAGGCAACACTTGAAGCA
LOC_Os11g34950
Os.48047.1.S1_at--539--5031Chr11:19981853..19981877 (25 bp)
GCAGAGGTCGCAGAGCACGCAAAAT
LOC_Os11g34950
Os.48047.1.S1_at--13--1371Chr11:19981842..19981866 (25 bp)
AGAGCACGCAAAATCCTTCGCGCAG
LOC_Os11g34950
Os.48047.1.S1_at--719--3631Chr11:19981827..19981851 (25 bp)
CTTCGCGCAGCAGCATCATGATGAA
LOC_Os11g34950
Os.48047.1.S1_at--936--8171Chr11:19981772..19981796 (25 bp)
GGAACTGGTAGACATCTTGTACATT
LOC_Os11g34950
Os.48047.1.S1_at--317--31Chr11:19981722..19981746 (25 bp)
ATTGGAGTATTCTGATGCCCGTTGA
LOC_Os11g34950
Os.48047.1.S1_at--923--3091Chr11:19981677..19981701 (25 bp)
AATATAAGTTGTTGACCGGCGCAAA
LOC_Os11g34950
Os.48047.1.S1_at--683--3171Chr11:19981653..19981677 (25 bp)
AATTGGTGTCAACTTTCATAGGATG
LOC_Os11g34950
Os.48047.1.S1_at--1039--8851Chr11:19981630..19981654 (25 bp)
TGATGATCTGCGATGGTGATACCAA
LOC_Os11g34950
Os.48047.1.S1_at--510--5072Chr09:19076502..19076521 (20 bp)
GCAGCGGTATTATATTGTCCTTTAA
LOC_Os09g31970
Target Sequence 
ACAAGGCTCAGACCTATTACTGGAGGCAACACTTGAAGCAGAGGTCGCAGAGCACGCAAAATCCTTCGCGCAGCAGCATC
ATGATGAACTGCACAAGGAGTGATGCGATCTTTTGATAGGAACTGGTAGACATCTTGTACATTAAAAACTTCAAAAATTC
TGACTACTATTGGAGTATTCTGATGCCCGTTGAGATGTAAGTGGACATAAAGNAATATAAGTTGTTGACCGGCGCAAAAT
TGGTGTCAACTTTCATAGGATGATGATCTGCGATGGTGATACCAAGTAGTAGTAGTGGAAATCTTGTTGCTTATTTGATT
GCAGCGGTATTATATTGTCCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis