Browse Element(s) Details


OsAffx.7296.1.S1_at

Description tigr:9639.m03144
TID=OsAffx.7296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3500010/11hypothetical protein
LOC_Os01g685981/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34950Os.48047.1.S1_at11/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.31302.1.S1_at2/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.30627.1.S1_at1/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.22569.1.S1_x_at1/1111+19981416..19986769expressed protein
LOC_Os11g34960NANA11+19987973..19988739hypothetical protein
LOC_Os11g34970OsAffx.7295.1.S1_at11/1111+19995278..19999146NB-ARC domain containing protein, expressed
LOC_Os11g34980OsAffx.31302.1.S1_at11/1111+19999900..20001521hypothetical protein
LOC_Os11g34990OsAffx.19164.1.S1_at11/1111+20004066..20004447hypothetical protein
LOC_Os11g35000OsAffx.7296.1.S1_at10/1111+20006774..20007202hypothetical protein
LOC_Os11g35020Os.9106.1.S1_at11/1111+20016673..20018831Yippee-like protein At4g27740, putative, expressed
LOC_Os11g35030Os.47395.1.S1_at11/1111+20020559..20023968expressed protein
LOC_Os11g35040OsAffx.19165.1.S1_at11/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35040Os.27730.1.S2_at1/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35050Os.49372.1.S1_at11/1111+20031864..20036874expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7296.1.S1_at--274--7271NONE
GTCCTTCTGGTTCTGTCATCAGATA
NONE
OsAffx.7296.1.S1_at--1043--1872Chr11:20006987..20007011 (25 bp)
ACGATGGCTGCGAGGATGACGAATT
LOC_Os11g35000
OsAffx.7296.1.S1_at--780--9851Chr11:20007011..20007035 (25 bp)
TATGGACGGTTAGACGCTCCGGTTT
LOC_Os11g35000
OsAffx.7296.1.S1_at--15--9971Chr11:20007021..20007045 (25 bp)
TAGACGCTCCGGTTTGTAAAAAGAT
LOC_Os11g35000
OsAffx.7296.1.S1_at--297--9791Chr11:20007045..20007069 (25 bp)
TAACCTTTAAAGTACATTGCGATGA
LOC_Os11g35000
OsAffx.7296.1.S1_at--464--8831Chr11:20007067..20007091 (25 bp)
TGATATCAAACCATGCGTCCAGCTA
LOC_Os11g35000
OsAffx.7296.1.S1_at--12--4651Chr11:20007081..20007105 (25 bp)
GCGTCCAGCTATGCGCAACTCAAGA
LOC_Os11g35000
OsAffx.7296.1.S1_at--1162--2511Chr11:20007097..20007121 (25 bp)
AACTCAAGATCCTCTATATCCCATT
LOC_Os11g35000
OsAffx.7296.1.S1_at--163--3771Chr11:20007108..20007132 (25 bp)
CTCTATATCCCATTCCTTCTATGGT
LOC_Os11g35000
OsAffx.7296.1.S1_at--489--832Chr11:20007128..20007152 (25 bp)
ATGGTTGCATCTATTGTTTGCCACA
LOC_Os11g35000
OsAffx.7296.1.S1_at--341--6851Chr11:20007143..20007167 (25 bp)
GTTTGCCACAATAGTTCAGAATGCG
LOC_Os11g35000
Target Sequence 
GTCCTTCTGGTTCTGTCATCAGATATGACGATGGCTGCGAGGATGACGAATTATGGACGGTTAGACGCTCCGGTTTGTAA
AAAGATAACCTTTAAAGTACATTGCGATGATATCAAACCATGCGTCCAGCTATGCGCAACTCAAGATCCTCTATATCCCA
TTCCTTCTATGGTTGCATCTATTGTTTGCCACAATAGTTCAGAATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis