Browse Element(s) Details


Os.49372.1.S1_at

Description gb:AK064026.1
DB_XREF= gi:32974044
TID=Os.49372.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B01, full insert sequence.
FL= gb:AK103468.1 gb:AK064026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3505011/11expressed protein
LOC_Os03g507301/11Eukaryotic membrane protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35000OsAffx.7296.1.S1_at10/1111+20006774..20007202hypothetical protein
LOC_Os11g35020Os.9106.1.S1_at11/1111+20016673..20018831Yippee-like protein At4g27740, putative, expressed
LOC_Os11g35030Os.47395.1.S1_at11/1111+20020559..20023968expressed protein
LOC_Os11g35040OsAffx.19165.1.S1_at11/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35040Os.27730.1.S2_at1/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35050Os.49372.1.S1_at11/1111+20031864..20036874expressed protein
LOC_Os11g35060OsAffx.19166.1.S1_at11/1111+20039019..20043352Agenet domain containing protein
LOC_Os11g35070OsAffx.19167.1.S1_at11/1111+20057889..20058146hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49372.1.S1_at--983--6551Chr11:20032395..20032419 (25 bp)
GATTACACCAATTCTCTCAGAGACG
LOC_Os11g35050
Os.49372.1.S1_at--891--351Chr11:20032343..20032367 (25 bp)
ATAAGGCCTTTGCTGTGTCCCGTGT
LOC_Os11g35050
Os.49372.1.S1_at--755--1851Chr11:20032147..20032171 (25 bp)
ACGACAGTTTGACAGCATCCGGGCT
LOC_Os11g35050
Os.49372.1.S1_at--917--8911Chr11:20032123..20032147 (25 bp)
TGAGCTGCGGCAACACTTAGCAATT
LOC_Os11g35050
Os.49372.1.S1_at--27--6311Chr11:20032079..20032103 (25 bp)
GATGAGTCCCAACTTAGGCACTGTA
LOC_Os11g35050
Os.49372.1.S1_at--876--3871Chr11:20032059..20032083 (25 bp)
CTGTATGCTGGGTGCTTATCTAAGA
LOC_Os11g35050
Os.49372.1.S1_at--728--8171Chr11:20032031..20032055 (25 bp)
GGAACCCTGCCTGTTGAATGTGTCA
LOC_Os11g35050
Os.49372.1.S1_at--559--7112Chr03:28913068..28913422 (25 bp)
GTCAGTCCTGACCTATTATTTCTAG
LOC_Os03g50730
Os.49372.1.S1_at--410--5851Chr11:20031986..20032010 (25 bp)
GACCATCTATCTGTGCTAATCTGAT
LOC_Os11g35050
Os.49372.1.S1_at--894--3051Chr11:20031969..20031993 (25 bp)
AATCTGATCTACCTATCTCTGTACT
LOC_Os11g35050
Os.49372.1.S1_at--560--2451Chr11:20031899..20031923 (25 bp)
AAAATTCGCCTATCGGCATGCGGGT
LOC_Os11g35050
Target Sequence 
GATTACACCAATTCTCTCAGAGACGGGGAGAAACTGAAAGAACAGATAGCGGATAAGGCCTTTGCTGTGTCCCGTGTTGA
TGCTCTGCTTGATGAAAATGATAGTGCTATAGCCAAGCTTGAACAGGAACTTGGGAAACTCCGATGGAAAGGCCAGAAGA
TGTCAAAGAAAAAGGAGGATGAAGATGCAGAGCTGTCAAGACTGAAGGCGGAGAATAACAATGCTGAGGAAGCACACGGT
GATGCTAAACGACAGTTTGACAGCATCCGGGCTGAGCTGCGGCAACACTTAGCAATTGATAGTCAGTAACCATCCTGATG
AGTCCCAACTTAGGCACTGTATGCTGGGTGCTTATCTAAGACTAGGAACCCTGCCTGTTGAATGTGTCAGTCCTGACCTA
TTATTTCTAGACCATCTATCTGTGCTAATCTGATCTACCTATCTCTGTACTTATTTCTTCCTAAAATTTGCCAGCTATCT
GCTGTTATTAGTTCCTAAAATTCGCCTATCGGCATGCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis