Browse Element(s) Details


OsAffx.19167.1.S1_at

Description tigr:9639.m03151
TID=OsAffx.19167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3507011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35050Os.49372.1.S1_at11/1111+20031864..20036874expressed protein
LOC_Os11g35060OsAffx.19166.1.S1_at11/1111+20039019..20043352Agenet domain containing protein
LOC_Os11g35070OsAffx.19167.1.S1_at11/1111+20057889..20058146hypothetical protein
LOC_Os11g35080NANA11+20065483..20066520expressed protein
LOC_Os11g35090Os.25491.1.S1_at11/1111+20070879..20076036Centromeric protein E, putative, expressed
LOC_Os11g35100NANA11+20078381..20080050hypothetical protein
LOC_Os11g35110OsAffx.24570.1.S1_at1/1111+20080810..20082874transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19167.1.S1_at--1054--3831Chr11:20057919..20057943 (25 bp)
CTGCTGCCATATCTTGAGATTTGCA
LOC_Os11g35070
OsAffx.19167.1.S1_at--836--8891Chr11:20057933..20057957 (25 bp)
TGAGATTTGCATCTTCCGATCTACC
LOC_Os11g35070
OsAffx.19167.1.S1_at--1044--4031Chr11:20057949..20057973 (25 bp)
CGATCTACCGCTGAATTTCTCTTGG
LOC_Os11g35070
OsAffx.19167.1.S1_at--211--5231Chr11:20057961..20057985 (25 bp)
GAATTTCTCTTGGTTTGTCTTGAGC
LOC_Os11g35070
OsAffx.19167.1.S1_at--583--10251Chr11:20057974..20057998 (25 bp)
TTTGTCTTGAGCAGCGAGGGCCTTG
LOC_Os11g35070
OsAffx.19167.1.S1_at--398--5131Chr11:20058010..20058034 (25 bp)
GCACAATGGGTGGAAGTCATATCAT
LOC_Os11g35070
OsAffx.19167.1.S1_at--1149--7651Chr11:20058017..20058041 (25 bp)
GGGTGGAAGTCATATCATGGTAAAT
LOC_Os11g35070
OsAffx.19167.1.S1_at--640--7811Chr11:20058035..20058059 (25 bp)
GGTAAATTACTACACTCTCCTTGGC
LOC_Os11g35070
OsAffx.19167.1.S1_at--930--131Chr11:20058040..20058064 (25 bp)
ATTACTACACTCTCCTTGGCCACTG
LOC_Os11g35070
OsAffx.19167.1.S1_at--120--10871Chr11:20058055..20058079 (25 bp)
TTGGCCACTGCTTCACGTTCCTCGG
LOC_Os11g35070
OsAffx.19167.1.S1_at--487--4031Chr11:20058092..20058116 (25 bp)
CGATGACCAATGGTGTTGCGACGAT
LOC_Os11g35070
Target Sequence 
CTGCTGCCATATCTTGAGATTTGCATCTTCCGATCTACCGCTGAATTTCTCTTGGTTTGTCTTGAGCAGCGAGGGCCTTG
GGGAACAAGGAGCACAATGGGTGGAAGTCATATCATGGTAAATTACTACACTCTCCTTGGCCACTGCTTCACGTTCCTCG
GCGACGACGATGACGATGACCAATGGTGTTGCGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis