Browse Element(s) Details


Os.25491.1.S1_at

Description gb:AK106372.1
DB_XREF= gi:32991581
TID=Os.25491.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C11, full insert sequence.
FL= gb:AK106372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3509011/11Centromeric protein E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35070OsAffx.19167.1.S1_at11/1111+20057889..20058146hypothetical protein
LOC_Os11g35080NANA11+20065483..20066520expressed protein
LOC_Os11g35090Os.25491.1.S1_at11/1111+20070879..20076036Centromeric protein E, putative, expressed
LOC_Os11g35100NANA11+20078381..20080050hypothetical protein
LOC_Os11g35110OsAffx.24570.1.S1_at1/1111+20080810..20082874transposon protein, putative, unclassified
LOC_Os11g35120OsAffx.31304.1.S1_at10/1111+20087773..20089812Protein kinase domain containing protein
LOC_Os11g35130OsAffx.32056.1.S1_at11/1111+20093852..20097007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35130OsAffx.32056.1.S1_x_at10/1111+20093852..20097007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.1.S1_s_at11/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.3.S1_s_at10/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.4.S1_s_at7/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25491.1.S1_at--1154--8171Chr11:20071440..20071464 (25 bp)
GGAACCAATCGACGCAAGATGCCAA
LOC_Os11g35090
Os.25491.1.S1_at--98--5971Chr11:20071409..20071433 (25 bp)
GAGAAGGACTGCACCGCCGATAGGC
LOC_Os11g35090
Os.25491.1.S1_at--280--3411Chr11:20071385..20071409 (25 bp)
CAGCAGCTGGAGGATTCAAAGGCGT
LOC_Os11g35090
Os.25491.1.S1_at--1103--5991Chr11:20071323..20071347 (25 bp)
GAGAGAAAACTCGTCCTTACTGGAT
LOC_Os11g35090
Os.25491.1.S1_at--303--10471Chr11:20071307..20071331 (25 bp)
TTACTGGATGCGCTCGCCAAGGCGA
LOC_Os11g35090
Os.25491.1.S1_at--561--1691Chr11:20071178..20071202 (25 bp)
AGCCAGGCCTTCTCGCTGAGGCAGG
LOC_Os11g35090
Os.25491.1.S1_at--547--6611Chr11:20071092..20071116 (25 bp)
GTTGGCCTTGCCCTGATGTTTCTTC
LOC_Os11g35090
Os.25491.1.S1_at--894--1631Chr11:20071038..20071062 (25 bp)
AGCGTGTTACGCATTCGATCCATCT
LOC_Os11g35090
Os.25491.1.S1_at--172--4051Chr11:20071023..20071047 (25 bp)
CGATCCATCTGCAACCAATTCTTAA
LOC_Os11g35090
Os.25491.1.S1_at--720--7431Chr11:20070983..20071007 (25 bp)
GTGTATTTGTTTGCTGTACGTGTGT
LOC_Os11g35090
Os.25491.1.S1_at--901--4491Chr11:20070931..20070955 (25 bp)
GCCGTGTGCAAAGCTCCTGTGAAGT
LOC_Os11g35090
Target Sequence 
GGAACCAATCGACGCAAGATGCCAAAGGCTAGAGAAGGACTGCACCGCCGATAGGCAGCAGCTGGAGGATTCAAAGGCGT
GGCGCGCGGCGCTCGAGGAGGAGCGCGACACGCTGAAGAGAGAAAACTCGTCCTTACTGGATGCGCTCGCCAAGGCGAGG
CAGGACGCCGACCNTCTCGTCGCCGACAGGCTGGAGGCGCTCAGGGAGCTGGACATGGAGAAGAGCAGGATGGATGAGCT
CAAGCAGGAGATCAAGCTCTTCAGCCAGGCCTTCTCGCTGAGGCAGGGGCAGCTCACCTCCCTGTACACCAAGTCCAAGG
CCATTGTGGAGAACTNCAAGACGTCCCAGTTGGCCTTGCCCTGATGTTTCTTCCTCTTCTTCTTCAGCAGCAACTGCAGA
GAAGCGTGTTACGCATTCGATCCATCTGCAACCAATTCTTAAATTGCAGATTGTGTAGTGTATTTGTTTGCTGTACGTGT
GTGCTGGATTANATTGCGTGGTATTNACGAGCCGTGTGCAAAGCTCCTGTGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis