Browse Element(s) Details


OsAffx.24570.1.S1_at

Description tigr:9630.m03282
TID=OsAffx.24570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g351101/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35070OsAffx.19167.1.S1_at11/1111+20057889..20058146hypothetical protein
LOC_Os11g35080NANA11+20065483..20066520expressed protein
LOC_Os11g35090Os.25491.1.S1_at11/1111+20070879..20076036Centromeric protein E, putative, expressed
LOC_Os11g35100NANA11+20078381..20080050hypothetical protein
LOC_Os11g35110OsAffx.24570.1.S1_at1/1111+20080810..20082874transposon protein, putative, unclassified
LOC_Os11g35120OsAffx.31304.1.S1_at10/1111+20087773..20089812Protein kinase domain containing protein
LOC_Os11g35130OsAffx.32056.1.S1_at11/1111+20093852..20097007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35130OsAffx.32056.1.S1_x_at10/1111+20093852..20097007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.1.S1_s_at11/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.3.S1_s_at10/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.4.S1_s_at7/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24570.1.S1_at--531--4191Chr02:20650977..20651001 (25 bp)
CCCCTCTCTTGGTCAGAGTGGCGAC
NONE
OsAffx.24570.1.S1_at--83--3771Chr02:20650974..20650998 (25 bp)
CTCTCTTGGTCAGAGTGGCGACGGC
NONE
OsAffx.24570.1.S1_at--244--2212Chr11:20081015..20081039 (25 bp)
ACAACGGCATGTGGGTGAGGACCAC
LOC_Os11g35110
OsAffx.24570.1.S1_at--265--6371Chr02:20650791..20650815 (25 bp)
GATCCAGTCGGCGTTGTTGCTGGAA
NONE
OsAffx.24570.1.S1_at--1143--571Chr02:20650790..20650814 (25 bp)
ATCCAGTCGGCGTTGTTGCTGGAAC
NONE
OsAffx.24570.1.S1_at--884--3452Chr05:23003192..23003212 (21 bp)
CAGTCGGCGTTGTTGCTGGAACCAC
NONE
OsAffx.24570.1.S1_at--607--1151Chr02:20650786..20650810 (25 bp)
AGTCGGCGTTGTTGCTGGAACCACA
NONE
OsAffx.24570.1.S1_at--497--7191Chr02:20650785..20650809 (25 bp)
GTCGGCGTTGTTGCTGGAACCACAC
NONE
OsAffx.24570.1.S1_at--314--9431Chr02:20650784..20650808 (25 bp)
TCGGCGTTGTTGCTGGAACCACACC
NONE
OsAffx.24570.1.S1_at--802--8371Chr02:20650782..20650806 (25 bp)
GGCGTTGTTGCTGGAACCACACCCA
NONE
OsAffx.24570.1.S1_at--1134--5732Chr03:34208390..34208414 (25 bp)
GACGGCGTCGCCAGACGAGCACGGG
NONE
Target Sequence 
CCCCTCTCTTGGTCAGAGTGGCGACGGCGACGGCGGCATGCGGGCGAGGGCCACAGCGGTGGCGACGGCGGCATGCGGGC
AAGGACCAGAGCGGCGGCGACAACGGCATGTGGGTGAGGACCACAGCGGAGGCGACGGCGGCATGCGGGCGAGGACCAAA
GCGGCGGCGGCGGGCAGGAGGCGGGGGATCCAGTCGGCGTTGTTGCTGGAACCACACCCACGACGGCGTCGCCAGACGAG
CACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis