Browse Element(s) Details


OsAffx.31304.1.S1_at

Description tigr:9639.m03156
TID=OsAffx.31304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=wall-associated protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3512010/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35080NANA11+20065483..20066520expressed protein
LOC_Os11g35090Os.25491.1.S1_at11/1111+20070879..20076036Centromeric protein E, putative, expressed
LOC_Os11g35100NANA11+20078381..20080050hypothetical protein
LOC_Os11g35110OsAffx.24570.1.S1_at1/1111+20080810..20082874transposon protein, putative, unclassified
LOC_Os11g35120OsAffx.31304.1.S1_at10/1111+20087773..20089812Protein kinase domain containing protein
LOC_Os11g35130OsAffx.32056.1.S1_at11/1111+20093852..20097007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35130OsAffx.32056.1.S1_x_at10/1111+20093852..20097007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.1.S1_s_at11/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.3.S1_s_at10/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35140OsAffx.10637.4.S1_s_at7/1111+20098860..20102546transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31304.1.S1_at--455--5131Chr11:20088993..20089017 (25 bp)
GCAAATATAGCATCCGTCAGTAACA
LOC_Os11g35120
OsAffx.31304.1.S1_at--407--6151Chr11:20088840..20088864 (25 bp)
GATAATACAACCCTTTGGCGATCCT
LOC_Os11g35120
OsAffx.31304.1.S1_at--855--8471Chr11:20088825..20088849 (25 bp)
TGGCGATCCTTCTCGGTAACACAAG
LOC_Os11g35120
OsAffx.31304.1.S1_at--427--8211Chr11:20088770..20088794 (25 bp)
GGAATGCCAGCTATGGTTCGACCAA
LOC_Os11g35120
OsAffx.31304.1.S1_at--697--7851Chr11:20088756..20088780 (25 bp)
GGTTCGACCAAGCACCCTAAGAAGA
LOC_Os11g35120
OsAffx.31304.1.S1_at--1093--5331Chr11:20088724..20088748 (25 bp)
GAAGAGTTTCGCCATTTTCAAACAT
LOC_Os11g35120
OsAffx.31304.1.S1_at--779--8531Chr11:20088620..20088644 (25 bp)
TGGATTATTCCTGTTTACTTCTTAA
LOC_Os11g35120
OsAffx.31304.1.S1_at--129--1391Chr11:20088595..20088619 (25 bp)
AGACGGTTTAGCAGAGTACCACAGA
LOC_Os11g35120
OsAffx.31304.1.S1_at--219--5211Chr11:20088569..20088593 (25 bp)
GAATTCTCGAGGACAATACGTTGGT
LOC_Os11g35120
OsAffx.31304.1.S1_at--798--6611Chr11:20088550..20088574 (25 bp)
GTTGGTCACAGTAAAGACGCCTTAT
LOC_Os11g35120
OsAffx.31304.1.S1_at--1092--2991NONE
AATGATGATCTGGTCTCACATCTCC
NONE
Target Sequence 
GCAAATATAGCATCCGTCAGTAACATGAAGATTATCAATCAAATAGGAAAATTAGCAACAAAGTGCCTAGCAATGGACAT
GAAGAAACGTCCAAAGATGAACATTGTGGCTGAACACCTTCGGAAGCTTAGAGAATATCGCAATGGAGGACATGATAATA
CAACCCTTTGGCGATCCTTCTCGGTAACACAAGATTTGTTTGAAAAATACAAGCAAAGCACAAGGAATGCCAGCTATGGT
TCGACCAAGCACCCTAAGAAGAAGAAGAAGAAGAGTTTCGCCATTTTCAAACATAATAGTGGCAATTCTAAGTTACTGGA
AAAGCTTGGTGCTGTAAGAATTTTCACAAAGAAAGAAGTAAAGAAATTTACAATGGATTATTCCTGTTTACTTCTTAAAG
ACGGTTTAGCAGAGTACCACAGAGGAATTCTCGAGGACAATACGTTGGTCACAGTAAAGACGCCTTATGATGGAGATGAG
AGCCTTCAAAAATTGTTTTCTCATGGAAATGATGATCTGGTCTCACATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis