Browse Element(s) Details


OsAffx.19166.1.S1_at

Description tigr:9639.m03150
TID=OsAffx.19166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Agenet domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3506011/11Agenet domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35020Os.9106.1.S1_at11/1111+20016673..20018831Yippee-like protein At4g27740, putative, expressed
LOC_Os11g35030Os.47395.1.S1_at11/1111+20020559..20023968expressed protein
LOC_Os11g35040OsAffx.19165.1.S1_at11/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35040Os.27730.1.S2_at1/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35050Os.49372.1.S1_at11/1111+20031864..20036874expressed protein
LOC_Os11g35060OsAffx.19166.1.S1_at11/1111+20039019..20043352Agenet domain containing protein
LOC_Os11g35070OsAffx.19167.1.S1_at11/1111+20057889..20058146hypothetical protein
LOC_Os11g35080NANA11+20065483..20066520expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19166.1.S1_at--887--8391Chr11:20042752..20042776 (25 bp)
GGCCCTATTCACCAAGACTAAGGAT
LOC_Os11g35060
OsAffx.19166.1.S1_at--288--2071Chr11:20042830..20042854 (25 bp)
ACATTTCCTTCCACTACAGCAGTTT
LOC_Os11g35060
OsAffx.19166.1.S1_at--423--5031Chr11:20042848..20042872 (25 bp)
GCAGTTTCCAGAAGCGGTGCGTGAA
LOC_Os11g35060
OsAffx.19166.1.S1_at--192--2251Chr11:20042927..20042951 (25 bp)
AAATTACGCATAACGGACAGCACGA
LOC_Os11g35060
OsAffx.19166.1.S1_at--299--2991Chr11:20043005..20043029 (25 bp)
AATGTCCAGTCTTTGCAGTGCAAGC
LOC_Os11g35060
OsAffx.19166.1.S1_at--318--2411Chr11:20043031..20043055 (25 bp)
AAACAAGGCGCTCCAGTTCAAATTG
LOC_Os11g35060
OsAffx.19166.1.S1_at--479--6751Chr11:20043046..20043070 (25 bp)
GTTCAAATTGGATCGCACCCATTCT
LOC_Os11g35060
OsAffx.19166.1.S1_at--32--5531Chr11:20043107..20043131 (25 bp)
GAAAAGCAATCTTCCTTGTCCCGCA
LOC_Os11g35060
OsAffx.19166.1.S1_at--164--4211Chr11:20043126..20043150 (25 bp)
CCCGCATTGGTGCATCGCGTGATGA
LOC_Os11g35060
OsAffx.19166.1.S1_at--844--1311Chr11:20043238..20043262 (25 bp)
AGAGGCGGAGCTGTCAAGACTCAAA
LOC_Os11g35060
OsAffx.19166.1.S1_at--948--291Chr11:20043270..20043294 (25 bp)
ATAGCAACGCTCAGGAGGCATGCCG
LOC_Os11g35060
Target Sequence 
GGCCCTATTCACCAAGACTAAGGATACATGGTCTGCATTTGAAATGATGGAAGTGTTTCGGAAGGATCCACAGGAGCCAC
ATTTCCTTCCACTACAGCAGTTTCCAGAAGCGGTGCGTGAAAATATGGCTATAGGGTTATTTTGGTCATATATAGATGCT
GGGGATGCAATAAGTAAATTACGCATAACGGACAGCACGAAGATATTTGAGAAGCACAACACAACACTCAACTATTTAGT
GGAAAATGGATTCAATGTCCAGTCTTTGCAGTGCAAGCTAAACAAGGCGCTCCAGTTCAAATTGGATCGCACCCATTCTC
TCGCATACAGGGAGAAGCTGAAAGAACAGGTGCTGGAAAAGCAATCTTCCTTGTCCCGCATTGGTGCATCGCGTGATGAA
AATGATAGTGCTATGGCCAAGCTCGAGATGGAACTTGGGAGACACCGATGGGATGGCCAGATGATGTCAAAGAAGATGGA
GGACGAAGAGGCGGAGCTGTCAAGACTCAAAGCGGAGGATAGCAACGCTCAGGAGGCATGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis