Browse Element(s) Details


Os.27730.1.S2_at

Description gb:AK072137.1
DB_XREF= gi:32982160
TID=Os.27730.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128O11, full insert sequence.
FL= gb:AK072137.1 gb:AK068161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3770011/11RNA recognition motif family protein, expressed
LOC_Os11g350401/11tyrosine/nicotianamine aminotransferases family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37710OsAffx.17382.1.S1_at11/118+23747753..23750195expressed protein
LOC_Os08g37720Os.33678.1.S1_x_at11/118+23750989..23753644expressed protein
LOC_Os08g37720Os.53903.1.S1_at11/118+23750989..23753644expressed protein
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27730.1.S2_at--448--1131Chr08:23738927..23738951 (25 bp)
AGTGCGTTGTCCTCGCACCAAGCGA
LOC_Os08g37700
Os.27730.1.S2_at--288--8811Chr08:23738886..23738910 (25 bp)
TGTTCCGTGCGACGCCACACCGAAA
LOC_Os08g37700
Os.27730.1.S2_at--801--6051Chr08:23738723..23738747 (25 bp)
GAGTTGTATAATCTAATTCCACTAT
LOC_Os08g37700
Os.27730.1.S2_at--589--431Chr08:23738713..23738737 (25 bp)
ATCTAATTCCACTATACTTACGTAG
LOC_Os08g37700
Os.27730.1.S2_at--306--9851Chr08:23738699..23738723 (25 bp)
TACTTACGTAGATAAAACACTGTTT
LOC_Os08g37700
Os.27730.1.S2_at--432--10451Chr08:23738675..23738699 (25 bp)
TTACGTAAAACGATATGGCATTAAT
LOC_Os08g37700
Os.27730.1.S2_at--183--97734Chr11:16866831..16867041 (25 bp)
TAATGAAATATACCGTTTAGCAGTT
NONE
Os.27730.1.S2_at--772--1131Chr08:23738556..23738580 (25 bp)
AGTTTGAAAAACACGTGATTATCTA
LOC_Os08g37700
Os.27730.1.S2_at--1138--5611Chr08:23738419..23738443 (25 bp)
GACACAATCTAATACTACCAATCTA
LOC_Os08g37700
Os.27730.1.S2_at--1159--291Chr08:23738408..23738432 (25 bp)
ATACTACCAATCTAGAGTACCAGAT
LOC_Os08g37700
Os.27730.1.S2_at--989--6971Chr08:23738392..23738416 (25 bp)
GTACCAGATTATTATGATACATTCC
LOC_Os08g37700
Target Sequence 
AGTGCGTTGTCCTCGCACCAAGCGACCGCCTCGCCGCCGATTGTTCCGTGCGACGCCACACCGAAACCGAACCGGGACAA
CCTATTTAATCTTTCAACAAATTTAAACCTTCAAATCTTGAAAAGTTTTCAACCAATGGATGCAATTCATTTTAAATAAA
ATAATTAAAAAGCATATCAAAAATAATAAATCTAGATATAAAAAGAGTTGTATAATCTAATTCCACTATACTTACGTAGA
TAAAACACTGTTTTACGTAAAACGATATGGCATTAATGTATAATTAATAGAGTTTTAATTATCATAACCTTAAAAATTTA
TTTATAGCAACTTTCATATAAAAAGTTTTTTAATGAAATATACCGTTTAGCAGTTTGAAAAACACGTGATTATCTAAATT
TTTATCCAATTTTTATTACATAAAAAAGACCTAAATTTACAAGAATATTCTCTCTCTCCGTCCCATAATATAAGTTATTT
TGGAGAGATATTTATTTTGGAGAGATATGACACAATCTAATACTACCAATCTAGAGTACCAGATTATTATGATACATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27730.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis