Browse Element(s) Details


OsAffx.17382.1.S1_at

Description tigr:9636.m03789
TID=OsAffx.17382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3771011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37710OsAffx.17382.1.S1_at11/118+23747753..23750195expressed protein
LOC_Os08g37720Os.33678.1.S1_x_at11/118+23750989..23753644expressed protein
LOC_Os08g37720Os.53903.1.S1_at11/118+23750989..23753644expressed protein
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17382.1.S1_at--955--9211Chr08:23748311..23748335 (25 bp)
TCCAGAACGTAGGACCGTTGGTGTT
LOC_Os08g37710
OsAffx.17382.1.S1_at--678--6351Chr08:23748283..23748307 (25 bp)
GATGCCGATGCTGAGTACCGGAGCC
LOC_Os08g37710
OsAffx.17382.1.S1_at--951--1171Chr08:23748270..23748294 (25 bp)
AGTACCGGAGCCCAGACCTGCAGGC
LOC_Os08g37710
OsAffx.17382.1.S1_at--472--1591Chr08:23748222..23748246 (25 bp)
AGCTCGCGGCCGTACGCCTGGTGTT
LOC_Os08g37710
OsAffx.17382.1.S1_at--917--9951Chr08:23748210..23748234 (25 bp)
TACGCCTGGTGTTGCTGGTCACCGG
LOC_Os08g37710
OsAffx.17382.1.S1_at--897--4191Chr08:23748159..23748183 (25 bp)
CCCGCCCTGACGATCGCAGAAGATT
LOC_Os08g37710
OsAffx.17382.1.S1_at--15--6391Chr08:23748148..23748172 (25 bp)
GATCGCAGAAGATTCCCGATCCCCT
LOC_Os08g37710
OsAffx.17382.1.S1_at--937--2671Chr08:23748116..23748140 (25 bp)
AAGCTGGCTCGGTGTTCCAGTCGCG
LOC_Os08g37710
OsAffx.17382.1.S1_at--530--4771Chr08:23747961..23747985 (25 bp)
GCTCCACCTTCCTCGAGGAAATGGC
LOC_Os08g37710
OsAffx.17382.1.S1_at--266--951Chr08:23747946..23747970 (25 bp)
AGGAAATGGCGCTCCCCTTGGCCGC
LOC_Os08g37710
OsAffx.17382.1.S1_at--1045--391Chr08:23747917..23747941 (25 bp)
ATCATGGCCGCGTCTGTCGTCACGG
LOC_Os08g37710
Target Sequence 
TCCAGAACGTAGGACCGTTGGTGTTGGCGATGCCGATGCTGAGTACCGGAGCCCAGACCTGCAGGCGCGGAGTCCGAGCA
TCGCGTCGGAGCTCGCGGCCGTACGCCTGGTGTTGCTGGTCACCGGCGCTTCGGGCTTGGACGCCGCGCGCGCCCGCCCT
GACGATCGCAGAAGATTCCCGATCCCCTCGGCCGCAAGCTGGCTCGGTGTTCCAGTCGCGCGCGCGCGCATGACCGCGCT
CCGGTGGGTGAGGAGCAGCACGGCGCTGCGGGGAAACAGTAGCGACGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGCCCT
CTCCCTCCTCCGCGTCGTCCACGCCCACGAGCTCCACCTTCCTCGAGGAAATGGCGCTCCCCTTGGCCGCGCCCATCATG
GCCGCGTCTGTCGTCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis