Browse Element(s) Details


Os.33678.1.S1_x_at

Description gb:AK099543.1
DB_XREF= gi:32984752
TID=Os.33678.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032L02, full insert sequence.
FL= gb:AK099543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3772011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37710OsAffx.17382.1.S1_at11/118+23747753..23750195expressed protein
LOC_Os08g37720Os.33678.1.S1_x_at11/118+23750989..23753644expressed protein
LOC_Os08g37720Os.53903.1.S1_at11/118+23750989..23753644expressed protein
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33678.1.S1_x_at--1070--4431Chr08:23753027..23753051 (25 bp)
GCCATTCTACGAGAGAGCACGGTAT
LOC_Os08g37720
Os.33678.1.S1_x_at--597--2571Chr08:23752355..23752379 (25 bp)
AACTGGCTTCTAACGTGGCTGATCA
LOC_Os08g37720
Os.33678.1.S1_x_at--904--7531Chr08:23752341..23752365 (25 bp)
GTGGCTGATCACCTTCCAGAGAATG
LOC_Os08g37720
Os.33678.1.S1_x_at--742--7911Chr08:23752252..23752273 (22 bp)
GGTTGAGGCCATTACTGAGAAGATT
LOC_Os08g37720
Os.33678.1.S1_x_at--457--6951Chr08:23751301..23751325 (25 bp)
GTAGAACCTATCTTCACGGAGATTG
LOC_Os08g37720
Os.33678.1.S1_x_at--459--10171Chr08:23751230..23751254 (25 bp)
TATATAATCACTAGCCCTACGTAGA
LOC_Os08g37720
Os.33678.1.S1_x_at--693--1451Chr08:23751208..23751232 (25 bp)
AGAAGGAAATACTCTCAGCTCCCCA
LOC_Os08g37720
Os.33678.1.S1_x_at--1124--9651Chr08:23751194..23751218 (25 bp)
TCAGCTCCCCATTGTGTATAGCATA
LOC_Os08g37720
Os.33678.1.S1_x_at--691--271Chr08:23751140..23751164 (25 bp)
ATATGTGTACCTTTCTGTATGAGTT
LOC_Os08g37720
Os.33678.1.S1_x_at--713--1211Chr08:23751119..23751143 (25 bp)
AGTTATACCATGCTTATTGTGACGC
LOC_Os08g37720
Os.33678.1.S1_x_at--838--6591Chr08:23751086..23751110 (25 bp)
GTTGTGGCTGGTGCTCGAAACTAAA
LOC_Os08g37720
Target Sequence 
GCCATTCTACGAGAGAGCACGGTATGTTGAAGATGAGACGGCTCGAAATGTGGAGACTGCTGCTGAGGTTGTGGAGCAAA
TAGCTGAGGTCACAGAGAAACTGGCTTCTAACGTGGCTGATCACCTTCCAGAGAATGGATGTCTGCAGAAAGTAGTGGAG
AAGATTGAATACATAGCTGAGGTAGTGGATGAAGATGCAGAGAAGGTTGAGGCCATTACTGAGAAGATTGAGAATTTCAG
CGACAAGATTGATGCTAAAGTAGAACCTATCTTCACGGAGATTGAGAAGGAATTCGAAGACTCAACATCAAATGATGGAG
TAAATGCAAATATATAATCACTAGCCCTACGTAGAAGGAAATACTCTCAGCTCCCCATTGTGTATAGCATATGCTTTTTT
TTTTGAATGATTCGTTGTACATATGTGTACCTTTCTGTATGAGTTATACCATGCTTATTGTGACGCATGGTGGTGTTGTG
GCTGGTGCTCGAAACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33678.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis