Browse Element(s) Details


Os.37571.1.S1_at

Description gb:AK063639.1
DB_XREF= gi:32973657
TID=Os.37571.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G07, full insert sequence.
FL= gb:AK063639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3766011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37571.1.S1_at--345--7111Chr08:23720931..23720955 (25 bp)
GTCAGCGGCAAACCGATCAGTGATT
LOC_Os08g37660
Os.37571.1.S1_at--976--2911Chr08:23720903..23720927 (25 bp)
AAGGAGGCGCGCTTGTGACATTCAT
LOC_Os08g37660
Os.37571.1.S1_at--382--10831Chr08:23720891..23720915 (25 bp)
TTGTGACATTCATAGCGCTCAGCCC
LOC_Os08g37660
Os.37571.1.S1_at--283--2451Chr08:23720844..23720868 (25 bp)
AAAATCGGCAACCATTGCGCCAGCG
LOC_Os08g37660
Os.37571.1.S1_at--96--4111Chr08:23720771..23720795 (25 bp)
CGCAACCTTGGATTGGGCCTTACTC
LOC_Os08g37660
Os.37571.1.S1_at--909--4531Chr08:23720667..23720691 (25 bp)
GCCCTCTTCTGAGATCGCATTGACG
LOC_Os08g37660
Os.37571.1.S1_at--445--3591Chr08:23720650..23720674 (25 bp)
CATTGACGCGTCGAGCGGCATGGAC
LOC_Os08g37660
Os.37571.1.S1_at--931--4031Chr08:23720554..23720578 (25 bp)
CGTTCGATCGTGTATACGTGCGTAA
LOC_Os08g37660
Os.37571.1.S1_at--1001--7811Chr08:23720517..23720541 (25 bp)
GGTCTTGTGATTTATTTTCTCCTTA
LOC_Os08g37660
Os.37571.1.S1_at--197--7031Chr08:23720459..23720483 (25 bp)
GTACATCTCAGCATTCTGTATGCCA
LOC_Os08g37660
Os.37571.1.S1_at--601--1431Chr08:23720408..23720432 (25 bp)
AGAACTTTGCTGTGATGTCTTTATA
LOC_Os08g37660
Target Sequence 
GTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTT
CATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAAGCTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGC
CGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGTCGCGGCG
GCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGA
GGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGT
AATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTATATTCATTTGTATATCCTCTGATATAATTTTCTGTACATCT
CAGCATTCTGTATGCCATTCAGTGATGTAGGTTAGAGTAACAAAGAACTTTGCTGTGATGTCTTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis