Browse Element(s) Details


Os.20672.1.S1_s_at

Description gb:AK065903.1
DB_XREF= gi:32975921
TID=Os.20672.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049J03, full insert sequence.
FL= gb:AK065903.1 gb:AK066429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3761010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20672.1.S1_s_at--163--7171Chr08:23709082..23709106 (25 bp)
GTCGTCCAATTTGGGACCTCTTTGG
LOC_Os08g37610
Os.20672.1.S1_s_at--656--1731Chr08:23709097..23709121 (25 bp)
ACCTCTTTGGTAGGCCTTCTGGAAG
LOC_Os08g37610
Os.20672.1.S1_s_at--631--971Chr08:23709120..23709144 (25 bp)
AGGAGAGTTCAGCTTGTCCAACAAA
LOC_Os08g37610
Os.20672.1.S1_s_at--715--2291NONE
AAATGTTTCTGTCGCTAATGTGGAT
NONE
Os.20672.1.S1_s_at--273--2291Chr08:23709534..23709558 (25 bp)
AAATGATATCCTCCGGTTTGAACAG
LOC_Os08g37610
Os.20672.1.S1_s_at--796--2071Chr08:23709845..23709869 (25 bp)
ACATTGGATTCTTCCGTGTCATCAT
LOC_Os08g37610
Os.20672.1.S1_s_at--488--7451Chr08:23709860..23709884 (25 bp)
GTGTCATCATCTCCTGTATCAATGC
LOC_Os08g37610
Os.20672.1.S1_s_at--923--6891Chr08:23709875..23709899 (25 bp)
GTATCAATGCCTTCTGGTCCAGCTA
LOC_Os08g37610
Os.20672.1.S1_s_at--756--1231Chr08:23710303..23710327 (25 bp)
AGATTTAGCCTCTGTTGTTCCTATA
LOC_Os08g37610
Os.20672.1.S1_s_at--608--271Chr08:23710325..23710349 (25 bp)
ATAGGAATACTCATGCTTCTGCCAG
LOC_Os08g37610
Os.20672.1.S1_s_at--634--8271Chr08:23710584..23710608 (25 bp)
GGCATGCTGCTATTTTGGCTTTCAT
LOC_Os08g37610
Target Sequence 
GTCGTCCAATTTGGGACCTCTTTGGTAGGCCTTCTGGAAGGAGAGTTCAGCTTGTCCAACAAACTTCAGATCAAAATGTT
TCTGTCGCTAATGTGGATAACAAAGACACACAATCAAATGATATCCTCCGGTTTGAACAGTTAAGACGTGAGCTGATTGA
GTTAGAGAAAAGAGTTCAAAAGAGCGCAGATAATGCTCAAAAGGAGGAGACATATGTCGCAAATGAAACATTGGATTCTT
CCGTGTCATCATCTCCTGTATCAATGCCTTCTGGTCCAGCTAGCAAGAAAGAAAATGTTATTACCAAATCAGTAGAGAAG
GTTAAGGAAACCACGACGACTGTTGTGCAAGGGACACAGCTCTTAGCAATTGACACAGGAGCTGCTATGGGTTTGTTAAG
AAGAGCTCTTATTGGGGATGAACTAACTCATAAGGAAAAGCAGGCTCTTCAAAGAACCCTGACAGATTTAGCCTCTGTTG
TTCCTATAGGAATACTCATGCTTCTGCCAGTAACTGCTGTTGGGCATGCTGCTATTTTGGCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20672.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis