Browse Element(s) Details


Os.12071.2.S1_at

Description gb:AK121571.1
DB_XREF= gi:37991194
TID=Os.12071.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nascent polypeptide associated complex alpha chain (P0504E02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035K07, full insert sequence.
FL= gb:AK121571.1 gb:AK064400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3765011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12071.2.S1_at--984--8371Chr08:23718050..23718074 (25 bp)
GGCGAAAGGTTCTCTGAGCCATTCT
LOC_Os08g37650
Os.12071.2.S1_at--1081--7891Chr08:23718043..23718067 (25 bp)
GGTTCTCTGAGCCATTCTTTCTTTA
LOC_Os08g37650
Os.12071.2.S1_at--798--4031Chr08:23717761..23717785 (25 bp)
CGTTACTATCATCACTGGGCATCAT
LOC_Os08g37650
Os.12071.2.S1_at--150--3331Chr08:23717749..23717773 (25 bp)
CACTGGGCATCATAGGCGCCATATT
LOC_Os08g37650
Os.12071.2.S1_at--1160--4491Chr08:23717700..23717724 (25 bp)
GCCGTCTGTGCCTTTTTTGCTTATT
LOC_Os08g37650
Os.12071.2.S1_at--419--10391Chr08:23717686..23717710 (25 bp)
TTTTGCTTATTTGTTGTGTCGAGAG
LOC_Os08g37650
Os.12071.2.S1_at--442--7451Chr08:23717671..23717695 (25 bp)
GTGTCGAGAGCTGTTGCTTTACTTG
LOC_Os08g37650
Os.12071.2.S1_at--562--7431Chr08:23717612..23717636 (25 bp)
GTGTAATACTCCGTAGTCCGCAAAT
LOC_Os08g37650
Os.12071.2.S1_at--1150--1131Chr08:23717598..23717622 (25 bp)
AGTCCGCAAATGACTAACTTATTTG
LOC_Os08g37650
Os.12071.2.S1_at--1068--3531Chr08:23717562..23717586 (25 bp)
CATCTGTTTTGTATTATTGAGCTGG
LOC_Os08g37650
Os.12071.2.S1_at--1049--6911Chr08:23717520..23717544 (25 bp)
GTAGATAACCGGCTATAAGCTTATA
LOC_Os08g37650
Target Sequence 
GGCGAAAGGTTCTCTGAGCCATTCTTTCTTTACCTCCACTTATGTTCAGTACACTTTATTTCGTGTTCTTTTTAGGGTAA
AAATATTGCAGGTTATTAGGGTCCTCATTCAGTGTGCAGATATACAACAATGCACGCACGTTGGAATTTGCATAGTCTTG
CGATTTTGTTCTTGCATACTCTTCCAGAAGCATTGATAGCTTTTGTCGAACTCCTGATTTTGTTCATAGTTTCAGTTATT
TGCTGGTTATGGGCCCTTCCAGCCAGCCTTCCTCTGGATTCTTGTTCTTCGTTACTATCATCACTGGGCATCATAGGCGC
CATATTGGGGCTTATTGTTTGTTGATTTGNGCCGTCTGTGCCTTTTTTGCTTATTTGTTGTGTCGAGAGCTGTTGCTTTA
CTTGGAAGTAGTAGATGTGCTGATATGAAACAATTACGGTGTAATACTCCGTAGTCCGCAAATGACTAACTTATTTGACN
GTCCATGTCATCTGTTTTGTATTATTGAGCTGGTTAGAGCATGTTTAATAGTAGATAACCGGCTATAAGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12071.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis