Browse Element(s) Details


Os.20672.1.S2_at

Description gb:AK066429.1
DB_XREF= gi:32976447
TID=Os.20672.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.20672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062F22, full insert sequence.
FL= gb:AK065903.1 gb:AK066429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3761011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20672.1.S2_at--566--10531Chr08:23711237..23711261 (25 bp)
TTCATAGTGTACAAGGGCGCCGTGT
LOC_Os08g37610
Os.20672.1.S2_at--878--4491Chr08:23711255..23711279 (25 bp)
GCCGTGTGCCCATTCAACATAGAAG
LOC_Os08g37610
Os.20672.1.S2_at--237--7751Chr08:23711358..23711382 (25 bp)
GGTGTATCAACTCTCCAAATGTAAA
LOC_Os08g37610
Os.20672.1.S2_at--138--1111Chr08:23711395..23711419 (25 bp)
AGTGGTGGCTTATCGGTCCGTGATC
LOC_Os08g37610
Os.20672.1.S2_at--610--7251Chr08:23711410..23711434 (25 bp)
GTCCGTGATCCTAGGTCATGCAGTG
LOC_Os08g37610
Os.20672.1.S2_at--351--651Chr08:23711427..23711451 (25 bp)
ATGCAGTGATGCACGACTCTGCTGT
LOC_Os08g37610
Os.20672.1.S2_at--780--3771Chr08:23711443..23711467 (25 bp)
CTCTGCTGTCAGCTTATGGGCAATT
LOC_Os08g37610
Os.20672.1.S2_at--881--7711Chr08:23711489..23711513 (25 bp)
GGTGGCGCACTGCTACATCCAATAG
LOC_Os08g37610
Os.20672.1.S2_at--300--2051Chr08:23711523..23711547 (25 bp)
ACTTTTGTGCTCTTGTAGTCTACTC
LOC_Os08g37610
Os.20672.1.S2_at--106--9931Chr08:23711548..23711572 (25 bp)
TACTGTCCGGTCTACATTGCCTGGT
LOC_Os08g37610
Os.20672.1.S2_at--1127--9551Chr08:23711575..23711599 (25 bp)
TCTTCCCCTTTCATTTACGTATCAT
LOC_Os08g37610
Target Sequence 
TTCATAGTGTACAAGGGCGCCGTGTGCCCATTCAACATAGAAGAAGGTTATCCAAAGTTCCTCTTGGATAATGTCTGTAG
GGTAGATATTTGGCTGATGATTTGTATATCTAGCTGAGATTGGTGTATCAACTCTCCAAATGTAAAGAGACAGGCCTGAG
TGGTGGCTTATCGGTCCGTGATCCTAGGTCATGCAGTGATGCACGACTCTGCTGTCAGCTTATGGGCAATTCAGCAGCAA
AAGATTGATGCTGGTGGCGCACTGCTACATCCAATAGCACGTAAAGACTTTTGTGCTCTTGTAGTCTACTCTACTGTCCG
GTCTACATTGCCTGGTCGTCTTCCCCTTTCATTTACGTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20672.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis