Browse Element(s) Details


OsAffx.19165.1.S1_at

Description tigr:9639.m03148
TID=OsAffx.19165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to tyrosine aminotransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3504011/11tyrosine/nicotianamine aminotransferases family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34980OsAffx.31302.1.S1_at11/1111+19999900..20001521hypothetical protein
LOC_Os11g34990OsAffx.19164.1.S1_at11/1111+20004066..20004447hypothetical protein
LOC_Os11g35000OsAffx.7296.1.S1_at10/1111+20006774..20007202hypothetical protein
LOC_Os11g35020Os.9106.1.S1_at11/1111+20016673..20018831Yippee-like protein At4g27740, putative, expressed
LOC_Os11g35030Os.47395.1.S1_at11/1111+20020559..20023968expressed protein
LOC_Os11g35040OsAffx.19165.1.S1_at11/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35040Os.27730.1.S2_at1/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35050Os.49372.1.S1_at11/1111+20031864..20036874expressed protein
LOC_Os11g35060OsAffx.19166.1.S1_at11/1111+20039019..20043352Agenet domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19165.1.S1_at--211--3391Chr11:20025690..20025714 (25 bp)
CAGTAGCTCCAGTTCTTACGTTAGG
LOC_Os11g35040
OsAffx.19165.1.S1_at--789--5871Chr11:20025611..20025635 (25 bp)
GAGCGATCCTAATGGCGTATTTCAA
LOC_Os11g35040
OsAffx.19165.1.S1_at--343--1211Chr11:20025344..20025368 (25 bp)
AGTTACCTTGATATCTCGGCTGATC
LOC_Os11g35040
OsAffx.19165.1.S1_at--403--2751Chr11:20025119..20025143 (25 bp)
AAGACCGTCGATGTCCTAAGGCAGA
LOC_Os11g35040
OsAffx.19165.1.S1_at--266--411Chr11:20025062..20025086 (25 bp)
ATCAGTTGCATCACTTGCCCAAGCA
LOC_Os11g35040
OsAffx.19165.1.S1_at--573--2632Chr11:20025037..20025061 (25 bp)
AACCTGAGGGTTCCATGTTTGTCAT
LOC_Os11g35040
OsAffx.19165.1.S1_at--781--8612Chr11:20030737..20030760 (24 bp)
TGGTGAAACTGGATCTGTCCTGCCT
NONE
OsAffx.19165.1.S1_at--875--6311Chr11:20024892..20024916 (25 bp)
GATGACATGGACTTCTGCTGCCAGC
LOC_Os11g35040
OsAffx.19165.1.S1_at--819--7751Chr11:20024688..20024875 (25 bp)
GGTGATTCTTTTGCCAGGATGTGCT
LOC_Os11g35040
OsAffx.19165.1.S1_at--447--2191Chr11:20024656..20024680 (25 bp)
ACAAGAATTGGCTCCGAATCACCTT
LOC_Os11g35040
OsAffx.19165.1.S1_at--580--51Chr11:20024600..20024624 (25 bp)
ATTGATAGGCTCAAGTCCTTCTGCT
LOC_Os11g35040
Target Sequence 
CAGTAGCTCCAGTTCTTACGTTAGGATCGATATCGAAGAGATGGGTTGTGCCTGGATGGCGACTTGGATGGATTGTGACG
AGCGATCCTAATGGCGTATTTCAAAGGACCAAGGTAGTGGAAAGCATCCAGAGTTACCTTGATATCTCGGCTGATCCTGC
AACATTTATCCAGGGAGCAATTCCACAACTCATAGAGAACACAAAGGAAGAATTCTTCGAAAAGACCGTCGATGTCCTAA
GGCAGACCGCAGATATTTGTTGGGAGAAGCTGAAGGGCATCAGTTGCATCACTTGCCCAAGCAAACCTGAGGGTTCCATG
TTTGTCATGGTGAAACTGGATCTGTCCTGCCTGCAAGGCATCAAAGATGACATGGACTTCTGCTGCCAGCTAGCAAAGGA
AGAATTGGTGATTCTTTTGCCAGGATGTGCTGTTGGATACAAGAATTGGCTCCGAATCACCTTCGCCATCGAACCGTCTT
CTCTTGAAGATGGTATTGATAGGCTCAAGTCCTTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis