Browse Element(s) Details


Os.9106.1.S1_at

Description gb:AK061812.1
DB_XREF= gi:32971830
TID=Os.9106.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B02, full insert sequence.
FL= gb:AK061812.1 gb:AK066863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3502011/11Yippee-like protein At4g27740, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34970OsAffx.7295.1.S1_at11/1111+19995278..19999146NB-ARC domain containing protein, expressed
LOC_Os11g34980OsAffx.31302.1.S1_at11/1111+19999900..20001521hypothetical protein
LOC_Os11g34990OsAffx.19164.1.S1_at11/1111+20004066..20004447hypothetical protein
LOC_Os11g35000OsAffx.7296.1.S1_at10/1111+20006774..20007202hypothetical protein
LOC_Os11g35020Os.9106.1.S1_at11/1111+20016673..20018831Yippee-like protein At4g27740, putative, expressed
LOC_Os11g35030Os.47395.1.S1_at11/1111+20020559..20023968expressed protein
LOC_Os11g35040OsAffx.19165.1.S1_at11/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35040Os.27730.1.S2_at1/1111+20024556..20027965tyrosine/nicotianamine aminotransferases family protein
LOC_Os11g35050Os.49372.1.S1_at11/1111+20031864..20036874expressed protein
LOC_Os11g35060OsAffx.19166.1.S1_at11/1111+20039019..20043352Agenet domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9106.1.S1_at--1024--7291Chr11:20017629..20017653 (25 bp)
GTGCGTTTCTTTTCTCTCATGCTAT
LOC_Os11g35020
Os.9106.1.S1_at--809--6831Chr11:20017625..20017649 (25 bp)
GTTTCTTTTCTCTCATGCTATGAAC
LOC_Os11g35020
Os.9106.1.S1_at--504--10311Chr11:20017619..20017643 (25 bp)
TTTCTCTCATGCTATGAACATATCT
LOC_Os11g35020
Os.9106.1.S1_at--1082--1231Chr11:20017550..20017574 (25 bp)
AGTTGCTGATATCTACTGCCGTGAT
LOC_Os11g35020
Os.9106.1.S1_at--1036--10151Chr11:20017541..20017565 (25 bp)
TATCTACTGCCGTGATTGCCGTGAG
LOC_Os11g35020
Os.9106.1.S1_at--897--1971Chr11:20017536..20017560 (25 bp)
ACTGCCGTGATTGCCGTGAGGTATT
LOC_Os11g35020
Os.9106.1.S1_at--1046--3851Chr11:20017411..20017435 (25 bp)
CTGGAAAGGGTTGGCGTGCCAAACT
LOC_Os11g35020
Os.9106.1.S1_at--94--2251Chr11:20017372..20017396 (25 bp)
AAATTCATACCTTTGTACATAGCTG
LOC_Os11g35020
Os.9106.1.S1_at--249--1751Chr11:20017364..20017388 (25 bp)
ACCTTTGTACATAGCTGTCGTCTGT
LOC_Os11g35020
Os.9106.1.S1_at--498--4731Chr11:20017351..20017375 (25 bp)
GCTGTCGTCTGTAAATTCGAATGTT
LOC_Os11g35020
Os.9106.1.S1_at--58--8771Chr11:20017166..20017190 (25 bp)
TGTTTGTCATCAAAGTAATTCCTTG
LOC_Os11g35020
Target Sequence 
GTGCGTTTCTTTTCTCTCATGCTATGAACATATCTATGGGTCCAAAGGAGGACAGGCAGCTTATGACAGGGCTTCACACA
GTTGCTGATATCTACTGCCGTGATTGCCGTGAGGTATTGGGTTGGAAGTATGAAAGAGCATTTGAAGAATCCCAGAAGTA
CAAGGAAGGAAAATTCATATTTGAGAAGGCAAAGATTGTTAAAGAAAATTGGTAATGACTGGAAAGGGTTGGCGTGCCAA
ACTTTCCTGTGAANGCTAAAATTCATACCTTTGTACATAGCTGTCGTCTGTAAATTCGAATGTTTAGCCTGCATGATGTT
GCTCATGCCATTTGTAATGTGCACTTGTTTTGCTGTTCATTTCTGTGAAGAAGACAGGCCTCTGTTTATTTCTTTGTCAA
CCATTTTCTCATTGTTCATAAATGGATAGCTTGTACATAATTATTTTCCTGTNTAAATGTTGAATGTTTGTCATCAAAGT
AATTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis