Browse Element(s) Details


OsAffx.7295.1.S1_at

Description tigr:9639.m03141
TID=OsAffx.7295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LZ-NBS-LRR class RGA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3497011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34940Os.25955.1.S1_at11/1111+19976907..19977601expressed protein
LOC_Os11g34950Os.48047.1.S1_at11/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.31302.1.S1_at2/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.30627.1.S1_at1/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.22569.1.S1_x_at1/1111+19981416..19986769expressed protein
LOC_Os11g34960NANA11+19987973..19988739hypothetical protein
LOC_Os11g34970OsAffx.7295.1.S1_at11/1111+19995278..19999146NB-ARC domain containing protein, expressed
LOC_Os11g34980OsAffx.31302.1.S1_at11/1111+19999900..20001521hypothetical protein
LOC_Os11g34990OsAffx.19164.1.S1_at11/1111+20004066..20004447hypothetical protein
LOC_Os11g35000OsAffx.7296.1.S1_at10/1111+20006774..20007202hypothetical protein
LOC_Os11g35020Os.9106.1.S1_at11/1111+20016673..20018831Yippee-like protein At4g27740, putative, expressed
LOC_Os11g35030Os.47395.1.S1_at11/1111+20020559..20023968expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7295.1.S1_at--1155--8871Chr11:19998490..19998514 (25 bp)
TGAGAATTTATCACCGGGACCACAA
LOC_Os11g34970
OsAffx.7295.1.S1_at--330--991Chr11:19998539..19998563 (25 bp)
AGGAGTGTGGCCAATTCAGTACCAA
LOC_Os11g34970
OsAffx.7295.1.S1_at--758--6971Chr11:19998557..19998581 (25 bp)
GTACCAATCTGGATGTCCTCATTGT
LOC_Os11g34970
OsAffx.7295.1.S1_at--30--931Chr11:19998627..19998651 (25 bp)
AGGACCTCCAAATCCTTGGGAACAT
LOC_Os11g34970
OsAffx.7295.1.S1_at--992--7611Chr11:19998644..19998668 (25 bp)
GGGAACATGCCATCTCTTAGTGATC
LOC_Os11g34970
OsAffx.7295.1.S1_at--27--3011Chr11:19998683..19998707 (25 bp)
AATGAGCCCACGCAAGACAGACATG
LOC_Os11g34970
OsAffx.7295.1.S1_at--974--3171Chr11:19998724..19998748 (25 bp)
CAATTGTTATCCATTCCACTGTCTA
LOC_Os11g34970
OsAffx.7295.1.S1_at--381--771Chr11:19998780..19998804 (25 bp)
AGGTGGCGTTTGCACAAGGACCCAT
LOC_Os11g34970
OsAffx.7295.1.S1_at--15--7391Chr11:19998863..19998887 (25 bp)
GGTAATTTCGACTTTGGACTGGAGA
LOC_Os11g34970
OsAffx.7295.1.S1_at--131--1291Chr11:19998907..19998931 (25 bp)
AGATGTTTGCGTCAATTATTCCGAC
LOC_Os11g34970
OsAffx.7295.1.S1_at--919--10391Chr11:19998922..19998946 (25 bp)
TTATTCCGACGCCAACAGATGGGAG
LOC_Os11g34970
Target Sequence 
TGAGAATTTATCACCGGGACCACAACAGCTTGAAGACATCGACATGAACAGGAGTGTGGCCAATTCAGTACCAATCTGGA
TGTCCTCATTGTCCTTCCTCTCATCCCTAGACATCAAGTTGAAAACATTGGGGCATAAGGACCTCCAAATCCTTGGGAAC
ATGCCATCTCTTAGTGATCTTACCTTATGGGTGAATGAGCCCACGCAAGACAGACATGAAAGGTTGGTCATCGACAATTG
TTATCCATTCCACTGTCTAACATTTCTTAAACTGATGGCTAACAACATGGAGGTGGCGTTTGCACAAGGACCCATGCAAA
AGCTCCAAAAACTACGCTTTGGATTTGGAGTGCGGAAAACAGTGGATCAGTTTGGTAATTTCGACTTTGGACTGGAGAAG
ATCTCAGTTGAGCATTTAGATGTTTGCGTCAATTATTCCGACGCCAACAGATGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis