Browse Element(s) Details


Os.25955.1.S1_at

Description gb:AK066323.1
DB_XREF= gi:32976341
TID=Os.25955.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062D04, full insert sequence.
FL= gb:AK066323.1 gb:AK104926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3494011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34890OsAffx.31300.1.S1_at11/1111+19951723..19952303hypothetical protein
LOC_Os11g34900OsAffx.19162.1.S1_at11/1111+19953150..19953499hypothetical protein
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein
LOC_Os11g34920Os.52499.1.S1_at11/1111+19959841..19963404stripe rust resistance protein Yr10, putative, expressed
LOC_Os11g34930NANA11+19965420..19969008retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g34940Os.25955.1.S1_at11/1111+19976907..19977601expressed protein
LOC_Os11g34950Os.48047.1.S1_at11/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.31302.1.S1_at2/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.30627.1.S1_at1/1111+19981416..19986769expressed protein
LOC_Os11g34950OsAffx.22569.1.S1_x_at1/1111+19981416..19986769expressed protein
LOC_Os11g34960NANA11+19987973..19988739hypothetical protein
LOC_Os11g34970OsAffx.7295.1.S1_at11/1111+19995278..19999146NB-ARC domain containing protein, expressed
LOC_Os11g34980OsAffx.31302.1.S1_at11/1111+19999900..20001521hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25955.1.S1_at--408--2751Chr11:19977536..19977560 (25 bp)
AAGAACCCGATTCCATGTCGCCGGT
LOC_Os11g34940
Os.25955.1.S1_at--920--5291Chr11:19977376..19977400 (25 bp)
GAAGGCGACGAAGCACCACATGAAG
LOC_Os11g34940
Os.25955.1.S1_at--263--1711Chr11:19977362..19977386 (25 bp)
ACCACATGAAGACGCGGCCCAAGAA
LOC_Os11g34940
Os.25955.1.S1_at--848--4371Chr11:19977344..19977368 (25 bp)
CCAAGAAGTCGCAGCCGTGGGACAG
LOC_Os11g34940
Os.25955.1.S1_at--277--4231Chr11:19977149..19977173 (25 bp)
CCGACGACTGATTCCGGCCATGTCT
LOC_Os11g34940
Os.25955.1.S1_at--399--3891Chr11:19977135..19977159 (25 bp)
CGGCCATGTCTCTTTCTACGAAATT
LOC_Os11g34940
Os.25955.1.S1_at--567--2231Chr11:19977115..19977139 (25 bp)
AAATTGCTCGTTCATTGCTAGGTTT
LOC_Os11g34940
Os.25955.1.S1_at--1009--8751Chr11:19977100..19977124 (25 bp)
TGCTAGGTTTGGTGTTATTGCTTCT
LOC_Os11g34940
Os.25955.1.S1_at--528--4911Chr11:19977081..19977105 (25 bp)
GCTTCTCTTGTTTGTCTGTGACCAA
LOC_Os11g34940
Os.25955.1.S1_at--1109--6851Chr11:19977072..19977096 (25 bp)
GTTTGTCTGTGACCAAAATCTTGGA
LOC_Os11g34940
Os.25955.1.S1_at--602--2971Chr11:19977034..19977058 (25 bp)
AATGGTTGCTGCTTTATATATATTG
LOC_Os11g34940
Target Sequence 
AAGAACCCGATTCCATGTCGCCGGTGACCGCGTTGCTCGCAGGCGCCGCCGCGCCGCTTCCGGCGATGGCACGGAGGCCG
TCCCGCGTGGCGCCCCCGGGATACTCCCCCGTCGGAGGAGGGTGCGCGCTGGCGGTGGAGTGCTCGTCGCGGCCGCAGAA
GAAGGCGACGAAGCACCACATGAAGACGCGGCCCAAGAAGTCGCAGCCGTGGGACAGGAAGCGCCGCCCCACGCAGTACC
GGCCGCTGCCGGCTCTCCCGCCGGACTGGACGCTCGTCGCCGCCGGCGCCACGGTCGACGCGTCGGCGCAGGCCGAGGAT
GCGGATGAGGAGGAACCGGAGCCGGTGGCCGCTCCGGTCGTCGAGGTGGTGGCGGCCCCGGCCGCCGCCGACGACTGATT
CCGGCCATGTCTCTTTCTACGAAATTGCTCGTTCATTGCTAGGTTTGGTGTTATTGCTTCTCTTGTTTGTCTGTGACCAA
AATCTTGGATGGTACTGTTTAAAATGGTTGCTGCTTTATATATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis