Browse Element(s) Details


Os.7150.1.S1_at

Description gb:AK101104.1
DB_XREF= gi:32986313
TID=Os.7150.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7150 (NCBI UniGene Cluster)
UG_TITLE=3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025C16, full insert sequence.
FL= gb:AK063890.1 gb:AK101104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g319708/113-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os02g408801/1160 ribosomal protein L14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31950NANA9+19049044..19055200retrotransposon protein, putative, unclassified
LOC_Os09g31960NANA9+19055825..19059115retrotransposon protein, putative, unclassified
LOC_Os09g31970Os.7150.1.S1_at8/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31970Os.48047.1.S1_at1/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31980OsAffx.17979.1.S1_at10/119+19082298..19084139C1-like domain containing protein
LOC_Os09g31990OsAffx.6464.1.S1_at11/119+19088295..19088984expressed protein
LOC_Os09g32000Os.55250.1.S1_at11/119+19092911..19093754expressed protein
LOC_Os09g32000OsAffx.1250.1.S1_x_at1/119+19092911..19093754expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0008299biological_processisoprenoid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005792cellular_componentmicrosome
GO:0005840cellular_componentribosome
GO:0016020cellular_componentmembrane
GO:0003735molecular_functionstructural constituent of ribosome
GO:0042282molecular_functionhydroxymethylglutaryl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7150.1.S1_at--679--1211Chr09:19078037..19078061 (25 bp)
AGTTACTGCCTCGAGATGCTTGTAT
LOC_Os09g31970
Os.7150.1.S1_at--1079--4451Chr09:19078044..19078068 (25 bp)
GCCTCGAGATGCTTGTATTACAGTT
LOC_Os09g31970
Os.7150.1.S1_at--1145--10471Chr09:19078061..19078085 (25 bp)
TTACAGTTTCAGCTTTGTAACTAGC
LOC_Os09g31970
Os.7150.1.S1_at--526--3631Chr09:19078123..19078147 (25 bp)
CTTGCCCTGGTGATAGTCGGTGATG
LOC_Os09g31970
Os.7150.1.S1_at--785--6491Chr09:19078134..19078158 (25 bp)
GATAGTCGGTGATGTTCCTGTAAAA
LOC_Os09g31970
Os.7150.1.S1_at--153--8612Chr09:19078165..19078189 (25 bp)
TGTGGTTCAGGGTGGTTATTTATAA
LOC_Os09g31970
Os.7150.1.S1_at--826--6791Chr09:19078179..19078203 (25 bp)
GTTATTTATAATTCGTGTTGGTGGT
LOC_Os09g31970
Os.7150.1.S1_at--13--6331Chr09:19078204..19078228 (25 bp)
GATGCAACTGTATGGGTAGAGTTTT
LOC_Os09g31970
Os.7150.1.S1_at--751--10334Chr12:21928208..21928227 (20 bp)
TTTACTGGTGTACTCCCTCCGTACT
NONE
Os.7150.1.S1_at--905--2771NONE
AAGAGAGCGGCAAATGGCCCTCCCA
NONE
Os.7150.1.S1_at--310--7071NONE
GTAAGGAAATGTGAAACGCGGAATT
NONE
Target Sequence 
AGTTACTGCCTCGAGATGCTTGTATTACAGTTTCAGCTTTGTAACTAGCNAATTNGTTTTTTCGTCTAATCTTTTTTTAT
TTTAANCTTGCCCTGGTGATAGTCGGTGATGTTCCTGTAAAAAAATGTTGTGGTTCAGGGTGGTTATTTATAATTCGTGT
TGGTGGTGATGCAACTGTATGGGTAGAGTTTTATGTTGTTTCCCTTAATAAATTTTCTTTTACCAAANNNNNANNNNTTT
TACTGGTGTACTCCCTCCGTACTTGTAAAGTTGTTTTGGACAGCGACACAGTCTTCAAAACATAATTTTGACTTCTTATT
TCCAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNNNNGNANNNGNNNNNATGAAAGAGAGCGGCAAATGGCC
CTCCCAAAGGGGCCCCCGAAGGGAAGGGGAGTAAGGAAATGTGAAACGCGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis