Browse Element(s) Details


Os.2319.1.S1_at

Description gb:AK120576.1
DB_XREF= gi:37990199
TID=Os.2319.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2319 (NCBI UniGene Cluster)
UG_TITLE=Putative dihydroflavonol reductase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135C24, full insert sequence.
FL= gb:AF134807.2 gb:AB110186.1 gb:AK120576.1 gb:AK099770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3202011/11ubiquitin fusion degradation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32000Os.55250.1.S1_at11/119+19092911..19093754expressed protein
LOC_Os09g32000OsAffx.1250.1.S1_x_at1/119+19092911..19093754expressed protein
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32030Os.17721.1.S1_at11/119+19118866..19120797Iojap protein, putative, expressed
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2319.1.S1_at--297--6591Chr09:19117036..19117060 (25 bp)
GATTGCGAGGTCGATTTCGCACCTC
LOC_Os09g32020
Os.2319.1.S1_at--874--5551Chr09:19116977..19117001 (25 bp)
GAAACCATCTGTTCCTTCAAGCAAG
LOC_Os09g32020
Os.2319.1.S1_at--708--2731Chr09:19116959..19116983 (25 bp)
AAGCAAGGCGGCTTCCGAAGATCAA
LOC_Os09g32020
Os.2319.1.S1_at--83--5251Chr09:19116887..19116911 (25 bp)
GAATCGTTTGGATGGTAAGGCCTCA
LOC_Os09g32020
Os.2319.1.S1_at--722--9771Chr09:19116872..19116896 (25 bp)
TAAGGCCTCAAAACCGCTAGCAGCA
LOC_Os09g32020
Os.2319.1.S1_at--255--1071Chr09:19116848..19116872 (25 bp)
AGGGATCTCTTCTAATCCTGCTGCT
LOC_Os09g32020
Os.2319.1.S1_at--898--3031Chr09:19116835..19116859 (25 bp)
AATCCTGCTGCTGCAAGTTCTGCAA
LOC_Os09g32020
Os.2319.1.S1_at--856--6051Chr09:19116765..19116789 (25 bp)
GAGTTAGCAACTCTACACGTCAGAA
LOC_Os09g32020
Os.2319.1.S1_at--595--2931Chr09:19116682..19116706 (25 bp)
AAGGCTCCTCCTGTTAAAGTTGATG
LOC_Os09g32020
Os.2319.1.S1_at--443--4951Chr09:19116625..19116649 (25 bp)
GCATTTTCTGGGACGAGCTACTCGT
LOC_Os09g32020
Os.2319.1.S1_at--98--3791Chr09:19116605..19116629 (25 bp)
CTCGTTGAAACGTTAGCTGCTGCTA
LOC_Os09g32020
Target Sequence 
GATTGCGAGGTCGATTTCGCACCTCCACTCGATTACAAAGAACCTGAAAAGGTTCAGCAGAAACCATCTGTTCCTTCAAG
CAAGGCGGCTTCCGAAGATCAAGATCAAATCAAAGATGAGCCAGAATTCAGAGCATTCACTGGTTCAGGGAATCGTTTGG
ATGGTAAGGCCTCAAAACCGCTAGCAGCAGGGATCTCTTCTAATCCTGCTGCTGCAAGTTCTGCAATTTCAGACTCGAAC
AAGAAGGTGAATCAGGAGACAGCAGCATCAGGAGTTAGCAACTCTACACGTCAGAAAAAGGGGAAGCTTGTTTTTGGTTC
AAACAAAAGCAGCAGCAGCAGCAAAGAACCAGAGAAGGCTCCTCCTGTTAAAGTTGATGAACTTGCAAAGAAGGAAGAGC
CCAAGTTCCAAGCATTTTCTGGGACGAGCTACTCGTTGAAACGTTAGCTGCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis