Browse Element(s) Details


OsAffx.17981.1.S1_at

Description tigr:9637.m02805
TID=OsAffx.17981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3206011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32030Os.17721.1.S1_at11/119+19118866..19120797Iojap protein, putative, expressed
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17981.1.S1_at--292--7911Chr09:19135266..19135290 (25 bp)
GGTTGCGCCTGGTGGTTGTCTTACC
LOC_Os09g32060
OsAffx.17981.1.S1_at--370--7511Chr09:19135255..19135279 (25 bp)
GTGGTTGTCTTACCTGTTGTTGATG
LOC_Os09g32060
OsAffx.17981.1.S1_at--1032--9831Chr09:19134905..19134929 (25 bp)
TAAAGATGCGGCGATCAGAGGAGAA
LOC_Os09g32060
OsAffx.17981.1.S1_at--866--8551Chr09:19134807..19134831 (25 bp)
TGGAGTGCGTACAAGAGGTGCATCA
LOC_Os09g32060
OsAffx.17981.1.S1_at--904--7771Chr09:19134791..19134815 (25 bp)
GGTGCATCATCTCTGTTATTGCGCA
LOC_Os09g32060
OsAffx.17981.1.S1_at--796--6791Chr09:19134777..19134801 (25 bp)
GTTATTGCGCAGATCTAGTGTCACT
LOC_Os09g32060
OsAffx.17981.1.S1_at--952--10071Chr09:19134762..19134786 (25 bp)
TAGTGTCACTGCCTCTATCTGTGTC
LOC_Os09g32060
OsAffx.17981.1.S1_at--245--491Chr09:19134746..19134770 (25 bp)
ATCTGTGTCGGCCTTAGAGCTCGCT
LOC_Os09g32060
OsAffx.17981.1.S1_at--1134--8591Chr09:19134722..19134746 (25 bp)
TGGTCGCGCCGCTTGGATCTGCACC
LOC_Os09g32060
OsAffx.17981.1.S1_at--210--9091Chr09:19134690..19134714 (25 bp)
TGCTCCTTAATCTGCGGTTGCCGAT
LOC_Os09g32060
OsAffx.17981.1.S1_at--973--1451Chr09:19134657..19134681 (25 bp)
AGAAGAGGCATCATTCGAGGAGGAA
LOC_Os09g32060
Target Sequence 
GGTTGCGCCTGGTGGTTGTCTTACCTGTTGTTGATGAAGAAGTCGAGCTTGGAGAGATTCGGAGGAGAAGAGGCGTCGTT
GGAGGAGGAAGGGAGGCACAATGGCCGAGGAGGATTAAAGATGCGGCGATCAGAGGAGAAGGAGGAAGGGAGGTGTGGCA
GTTAGAGAAAGGAGAGCTCGGCGGGAGCGGCAGTGCATCAGGTGAAGAGGAGGTGGAGTGCGTACAAGAGGTGCATCATC
TCTGTTATTGCGCAGATCTAGTGTCACTGCCTCTATCTGTGTCGGCCTTAGAGCTCGCTGGTCGCGCCGCTTGGATCTGC
ACCGGCCCGCTGCTCCTTAATCTGCGGTTGCCGATGAAGGAGGAGAAGAGGCATCATTCGAGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis