Browse Element(s) Details


Os.8255.2.S1_at

Description gb:AK101317.1
DB_XREF= gi:32986526
TID=Os.8255.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034D09, full insert sequence.
FL= gb:AK101317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3209011/11Methyl-binding domain protein MBD111, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8255.2.S1_at--939--4591Chr09:19150616..19150640 (25 bp)
GCGAACGAGCTTCTCATGCTGATGA
LOC_Os09g32090
Os.8255.2.S1_at--1091--613Chr11:23093461..23093671 (25 bp)
ATGCTGATGAGCCACCTGAAGCAGA
NONE
Os.8255.2.S1_at--945--2651Chr09:19150550..19150574 (25 bp)
AAGCGGAAAGCCCTCTGTTCGAAGA
LOC_Os09g32090
Os.8255.2.S1_at--1096--6191Chr09:19150527..19150551 (25 bp)
GAGGCACATTCTAACCATGTTTCTG
LOC_Os09g32090
Os.8255.2.S1_at--158--6211Chr09:19150466..19150490 (25 bp)
GAGGCCCTTCAGCTTGAAGACTGCA
LOC_Os09g32090
Os.8255.2.S1_at--793--51Chr09:19150405..19150429 (25 bp)
ATTGATTCTCTTTTGCGCTTCATAA
LOC_Os09g32090
Os.8255.2.S1_at--331--7551Chr09:19150375..19150399 (25 bp)
GGGCCAGTTTTTCCTGTAATGCAAG
LOC_Os09g32090
Os.8255.2.S1_at--487--8431Chr09:19150351..19150375 (25 bp)
GGCCTTACTGGCCTTTATATGTATC
LOC_Os09g32090
Os.8255.2.S1_at--393--751Chr09:19150333..19150357 (25 bp)
ATGTATCATGCCACGTTGGTGCCAG
LOC_Os09g32090
Os.8255.2.S1_at--632--8011Chr09:19150305..19150329 (25 bp)
GGAGGCTGAATCTGACTCAAAATCA
LOC_Os09g32090
Os.8255.2.S1_at--79--1691Chr09:19150246..19150270 (25 bp)
AGCCATGTTGGAACTCTTTTCAGGA
LOC_Os09g32090
Target Sequence 
GCGAACGAGCTTCTCATGCTGATGAGCCACCTGAAGCAGAAGAACTGGAGCTAACNCGAAAAAGGAAAGCGGAAAGCCCT
CTGTTCGAAGAGGCACATTCTAACCATGTTTCTGATGAACCAAAAACCAAGTTAGAGGATACTCAAAATGGAGGCCCTTC
AGCTTGAAGACTGCAACACAGTGATACCTTNAGCTCCCCATCCATGGTTTTATTGATTCTCTTTTGCGCTTCATAATTTG
GGGGCCAGTTTTTCCTGTAATGCAAGGCCTTACTGGCCTTTATATGTATCATGCCACGTTGGTGCCAGGTTGGAGGCTGA
ATCTGACTCAAAATCAAGTTTTCGGACACGTTACAATTGTTGTATCCAAAAGCCATGTTGGAACTCTTTTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8255.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis