Browse Element(s) Details


Os.16365.1.S1_at

Description gb:AK107667.1
DB_XREF= gi:32992876
TID=Os.16365.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H04, full insert sequence.
FL= gb:AK107667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16365.1.S1_at--546--7091Chr09:19166942..19166966 (25 bp)
GTCAACGTCAAATCACATCGCGGCG
LOC_Os09g32100
Os.16365.1.S1_at--426--411Chr09:19166998..19167022 (25 bp)
ATCATCGGTGGACAAGAACGGCGCC
LOC_Os09g32100
Os.16365.1.S1_at--371--831Chr09:19167032..19167056 (25 bp)
ATGGATTGCACGCTTGTCTGACGAA
LOC_Os09g32100
Os.16365.1.S1_at--599--2731Chr09:19167067..19167091 (25 bp)
AAGCAATCTTGGCTCGATCGATGAT
LOC_Os09g32100
Os.16365.1.S1_at--1105--10151Chr09:19167097..19167121 (25 bp)
TATCTGCAGCGAGATTTGCTCCGGT
LOC_Os09g32100
Os.16365.1.S1_at--1157--3711Chr09:19167152..19167176 (25 bp)
CTACGGTACCTGCAGCATGCTTGTT
LOC_Os09g32100
Os.16365.1.S1_at--923--8311Chr09:19167234..19167258 (25 bp)
GGCTCTATAGCTAGTGCATATGCAT
LOC_Os09g32100
Os.16365.1.S1_at--419--1571Chr09:19167272..19167296 (25 bp)
AGCTAGTTTCTTGTGGATCAGCAAC
LOC_Os09g32100
Os.16365.1.S1_at--1054--6431Chr09:19167287..19167311 (25 bp)
GATCAGCAACACGTACGTCAGTGGA
LOC_Os09g32100
Os.16365.1.S1_at--150--3051Chr09:19167344..19167368 (25 bp)
AATCCGTTCTTGAGTTCGTTGCATG
LOC_Os09g32100
Os.16365.1.S1_at--318--851Chr09:19167377..19167401 (25 bp)
ATGGAATCCAACAGCGCGTCTTGCT
LOC_Os09g32100
Target Sequence 
GTCAACGTCAAATCACATCGCGGCGGCGACTGCGGCTGCGGCTGCGGCAATGGGAAATCATCGGTGGACAAGAACGGCGC
CGCAGCCGCCATGGATTGCACGCTTGTCTGACGAAGAAGCAAGCAAAGCAATCTTGGCTCGATCGATGATCGATCTATCT
GCAGCGAGATTTGCTCCGGTCCAACAAAAAATANCTCGAGATACCGGTANCTACGGTACCTGCAGCATGCTTGTTCATGT
GTGATATAAGTGNAGTGATGGTACAGTAGACTGCCACATTGGTAGNTTAATTTGGCTCTATAGCTAGTGCATATGCATGC
GTGGACGAAAAAGCTAGTTTCTTGTGGATCAGCAACACGTACGTCAGTGGACGATATAAGTTGCTTCCTAGATGGTACTA
GGAAATCCGTTCTTGAGTTCGTTGCATGCATATGACATGGAATCCAACAGCGCGTCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis