Browse Element(s) Details


Os.11004.1.S1_at

Description gb:AK063579.1
DB_XREF= gi:32973597
TID=Os.11004.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H06, full insert sequence.
FL= gb:AK063579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3215011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11004.1.S1_at--906--5531Chr09:19187008..19187078 (25 bp)
GAAACACTCGCTTTCAAGGGAGAGG
LOC_Os09g32150
Os.11004.1.S1_at--598--1291Chr09:19186890..19186914 (25 bp)
AGATCGCGCCGATTGTGGTGGACTT
LOC_Os09g32150
Os.11004.1.S1_at--892--11Chr09:19186879..19186903 (25 bp)
ATTGTGGTGGACTTCATCCGTATTT
LOC_Os09g32150
Os.11004.1.S1_at--1008--1911Chr09:19185797..19185821 (25 bp)
ACGGTAGCTAACTGCCATCGAAGAT
LOC_Os09g32150
Os.11004.1.S1_at--1004--1151Chr09:19185766..19185790 (25 bp)
AGTACTTTGGCCCAGGAGTCGACAT
LOC_Os09g32150
Os.11004.1.S1_at--317--4551Chr09:19185757..19185781 (25 bp)
GCCCAGGAGTCGACATTATGCAGAT
LOC_Os09g32150
Os.11004.1.S1_at--492--3451Chr09:19185543..19185567 (25 bp)
CAGTTTGTTTTTGATGGGTAGCACC
LOC_Os09g32150
Os.11004.1.S1_at--1089--5071Chr09:19185523..19185547 (25 bp)
GCACCGTGATGCTCGAAGGGATATC
LOC_Os09g32150
Os.11004.1.S1_at--252--7131Chr09:19185498..19185522 (25 bp)
GTCATATCGACACATGTTGGCACAT
LOC_Os09g32150
Os.11004.1.S1_at--632--5091Chr09:19185479..19185503 (25 bp)
GCACATTTTAAGCTGGCCCATTTTA
LOC_Os09g32150
Os.11004.1.S1_at--184--2691Chr09:19185470..19185494 (25 bp)
AAGCTGGCCCATTTTATATCTGAAA
LOC_Os09g32150
Target Sequence 
GAAACACTCGCTTTCAAGGGAGAGGAGAAGGTGATCGTTGCGGTGACTGACGAGGAGAAGGCGATTATCGCGGTGAAAGT
GTGCGACAAGGCTAACAAGATATACAACATCCTCTCCAAGATCGCGCCGATTGTGGTGGACTTCATCCGTATTTTTGGAC
GGTAGCTAACTGCCATCGAAGATGTGAAGAGTACTTTGGCCCAGGAGTCGACATTATGCAGATAATAGGAGGTTGAGGTT
GATACTATGCAGGCAATAGGAAGTTTACCTAGATAGGTTCAGTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGC
TGCCCTATGTCACACATATAATCCAGTTTGTTTGGATTTATTAGCTAGATATATTCAGGATTTGATTTGCTGCCCTATGT
CACACATATATCCAGTTTGTTTTTGATGGGTAGCACCGTGATGCTCGAAGGGATATCGTCATATCGACACATGTTGGCAC
ATTTTAAGCTGGCCCATTTTATATCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis