Browse Element(s) Details


OsAffx.6465.1.S1_at

Description tigr:9637.m02816
TID=OsAffx.6465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3218011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6465.1.S1_at--164--3171Chr09:19207109..19207133 (25 bp)
AATTGCCTGTCTTCTGTGATGCTGA
LOC_Os09g32180
OsAffx.6465.1.S1_at--259--791Chr09:19207209..19207233 (25 bp)
ATGTGTCCCTTTGTTATGGTACCTC
LOC_Os09g32180
OsAffx.6465.1.S1_at--749--711Chr09:19207244..19207268 (25 bp)
AGTTGGAACCTTCTGAACTGCCCAT
LOC_Os09g32180
OsAffx.6465.1.S1_at--404--1111Chr09:19207284..19207308 (25 bp)
AGTGTTTTGGGCTCTATCTCATATT
LOC_Os09g32180
OsAffx.6465.1.S1_at--113--9611Chr09:19207302..19207326 (25 bp)
TCATATTTCTGTGTTGGAGCCTGGA
LOC_Os09g32180
OsAffx.6465.1.S1_at--169--6911Chr09:19207327..19207351 (25 bp)
GTATCTACAGAGTCTTCAGTGCCTG
LOC_Os09g32180
OsAffx.6465.1.S1_at--627--1611Chr09:19207841..19207865 (25 bp)
AGCTGTCTTGGAGCTTGCGTCACAA
LOC_Os09g32180
OsAffx.6465.1.S1_at--660--7471Chr09:19207871..19207895 (25 bp)
GGGTTTGACATCTGGGCTTCAATTT
LOC_Os09g32180
OsAffx.6465.1.S1_at--957--4891Chr09:19207886..19207910 (25 bp)
GCTTCAATTTCTGTGCTCGAGTGCA
LOC_Os09g32180
OsAffx.6465.1.S1_at--755--3851Chr09:19207917..19207941 (25 bp)
CTGACTGCCACATTTTTGGGTCTAA
LOC_Os09g32180
OsAffx.6465.1.S1_at--886--1211Chr09:19207949..19208046 (25 bp)
AGTTCAATCGGTTTCTGGCGCTGGC
LOC_Os09g32180
Target Sequence 
AATTGCCTGTCTTCTGTGATGCTGAAGAGATGGATTACGGCTGTTGGAATGATTTCAATGTTCTGTACAAGTTGACATGT
CGGGAATGCAAGGATTGGAGATGTGTCCCTTTGTTATGGTACCTCATAATGGTTCAGTTGGAACCTTCTGAACTGCCCAT
GGCCTTTTCAAAAGCAGTGTTTTGGGCTCTATCTCATATTTCTGTGTTGGAGCCTGGAGTATCTACAGAGTCTTCAGTGC
CTGTGAATGATTGGTTGTCATCACATGCTGGAGAAGTATTGCCAACATTTTCATGGCAAGTCCCAAATGGTGCAGATGAT
GGTGGAGTTGGGAAGGAGTGTATCAATACTCTCAAGAATCTGCGGCAAGTTGGGCGAGCTGTCTTGGAGCTTGCGTCACA
AGGACGGGGTTTGACATCTGGGCTTCAATTTCTGTGCTCGAGTGCATCTTCCCTGACTGCCACATTTTTGGGTCTAAGAT
ATGCAGTTCAATCGGTTTCTGGCGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis