Browse Element(s) Details


OsAffx.30113.1.S1_at

Description tigr:9637.m02817
TID=OsAffx.30113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3219011/11tRNA-splicing endonuclease positive effector, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30113.1.S1_at--452--771Chr09:19210806..19210830 (25 bp)
ATGGGACCATTTCTGGAGACCTTCC
LOC_Os09g32190
OsAffx.30113.1.S1_at--672--8151Chr09:19210759..19210783 (25 bp)
GGAAAACTCACCTCCTAGGACAATA
LOC_Os09g32190
OsAffx.30113.1.S1_at--247--5371Chr09:19210719..19210743 (25 bp)
GAAGAGCTGAATGTTTGCGCACAAT
LOC_Os09g32190
OsAffx.30113.1.S1_at--358--791Chr09:19210696..19210720 (25 bp)
ATGTGTTTGCGAACACCACCAGGCA
LOC_Os09g32190
OsAffx.30113.1.S1_at--1029--8991Chr09:19210654..19210678 (25 bp)
TGAATATCGGTCTGGCGTTGACGCC
LOC_Os09g32190
OsAffx.30113.1.S1_at--206--6651Chr09:19210638..19210662 (25 bp)
GTTGACGCCCTCCTGAAAGTGTTAC
LOC_Os09g32190
OsAffx.30113.1.S1_at--723--2311Chr09:19210623..19210647 (25 bp)
AAAGTGTTACGGCTTCTCGATGAAG
LOC_Os09g32190
OsAffx.30113.1.S1_at--965--8031Chr09:19210549..19210573 (25 bp)
GGAGTACAAACCTTCATGCCATGAT
LOC_Os09g32190
OsAffx.30113.1.S1_at--133--1311Chr09:19209860..19209884 (25 bp)
AGATGACCTGTCACTGGCTAATCAG
LOC_Os09g32190
OsAffx.30113.1.S1_at--778--8311Chr09:19209845..19209869 (25 bp)
GGCTAATCAGTTCCAGACATTCATT
LOC_Os09g32190
OsAffx.30113.1.S1_at--250--5331Chr09:19209799..19209823 (25 bp)
GAAGTGAGCCTTTCTACTAATCAGC
LOC_Os09g32190
Target Sequence 
ATGGGACCATTTCTGGAGACCTTCCTTGGTTACTTTGATGACCAAGAGGAAAACTCACCTCCTAGGACAATATGGAAACG
GATTTCTGAAGAGCTGAATGTTTGCGCACAATGTGTTTGCGAACACCACCAGGCACAGAAGGATTTTGATTCTGAATATC
GGTCTGGCGTTGACGCCCTCCTGAAAGTGTTACGGCTTCTCGATGAAGAGAGGGTTACAGAACATCTTAGGCAGATGAAT
GCAAAAGCACAATTAAAGGAGTACAAACCTTCATGCCATGATGCAGAAGTTAGCATAATGTTTGAAGTTTTGATGTATCC
CATTTTGTTAGATGACCTGTCACTGGCTAATCAGTTCCAGACATTCATTGAAAGAATTGATGAAATATTTGAAGTGAGCC
TTTCTACTAATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis