Browse Element(s) Details


OsAffx.17982.1.S1_at

Description tigr:9637.m02815
TID=OsAffx.17982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g321708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17982.1.S1_at--271--1911Chr09:19194516..19194540 (25 bp)
ACGTGGTTCCCGAGCCTTGAGGAGC
LOC_Os09g32170
OsAffx.17982.1.S1_at--669--3971Chr09:19194517..19194541 (25 bp)
CGTGGTTCCCGAGCCTTGAGGAGCT
LOC_Os09g32170
OsAffx.17982.1.S1_at--1107--8571Chr09:19194519..19194543 (25 bp)
TGGTTCCCGAGCCTTGAGGAGCTCC
LOC_Os09g32170
OsAffx.17982.1.S1_at--715--7891Chr09:19194520..19194544 (25 bp)
GGTTCCCGAGCCTTGAGGAGCTCCT
LOC_Os09g32170
OsAffx.17982.1.S1_at--698--10751Chr09:19194532..19194556 (25 bp)
TTGAGGAGCTCCTCGAGTACGAGGC
LOC_Os09g32170
OsAffx.17982.1.S1_at--778--6071Chr09:19194546..19194570 (25 bp)
GAGTACGAGGCCACGGACTTCAGCC
LOC_Os09g32170
OsAffx.17982.1.S1_at--1075--1171Chr09:19194547..19194571 (25 bp)
AGTACGAGGCCACGGACTTCAGCCC
LOC_Os09g32170
OsAffx.17982.1.S1_at--689--9911Chr09:19194549..19194573 (25 bp)
TACGAGGCCACGGACTTCAGCCCCG
LOC_Os09g32170
OsAffx.17982.1.S1_at--1151--5891NONE
GAGCTCGCCCGCGACAAACAAGAAA
NONE
OsAffx.17982.1.S1_at--1003--1571NONE
AGCTCGCCCGCGACAAACAAGAAAC
NONE
OsAffx.17982.1.S1_at--572--9331NONE
TCGCCCGCGACAAACAAGAAACCAC
NONE
Target Sequence 
ACGTGGTTCCCGAGCCTTGAGGAGCTCCTCGAGTACGAGGCCACGGACTTCAGCCCCGCCGCGCAGCGCGAGAGGTTCCG
GCACGAGTCCGGGGATGCGGCGGCCGCGCTGAGGGGCGCCGGCGCCGGCGCCGTCCGCCCGCTCCGGGAGCTCGCCCGCG
ACAAACAAGAAACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis