Browse Element(s) Details


Os.2319.1.S2_at

Description gb:AF134807.2
DB_XREF= gi:47524188
TID=Os.2319.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2319 (NCBI UniGene Cluster)
DEF=Oryza sativa putative dihydroflavonol reductase mRNA, complete cds.
PROD=putative dihydroflavonol reductase
FL= gb:AF134807.2 gb:AB110186.1 gb:AK120576.1 gb:AK099770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g320207/11ubiquitin fusion degradation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32000Os.55250.1.S1_at11/119+19092911..19093754expressed protein
LOC_Os09g32000OsAffx.1250.1.S1_x_at1/119+19092911..19093754expressed protein
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32030Os.17721.1.S1_at11/119+19118866..19120797Iojap protein, putative, expressed
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2319.1.S2_at--992--3551Chr09:19115252..19115276 (25 bp)
CATCATTTGTGATTGGGCCCAGTTT
LOC_Os09g32020
Os.2319.1.S2_at--129--2111Chr09:19115224..19115248 (25 bp)
ACATGAACTGTCTGTCACTGCTTCA
LOC_Os09g32020
Os.2319.1.S2_at--996--5891Chr09:19114959..19114983 (25 bp)
GAGCTGCCACATTCTGGTGTACGAA
LOC_Os09g32020
Os.2319.1.S2_at--767--9931Chr09:19114940..19114964 (25 bp)
TACGAAGCACCTCAGGCTACTGGGA
LOC_Os09g32020
Os.2319.1.S2_at--491--6051Chr09:19114917..19114941 (25 bp)
GAGATATCTCTGCAACTCCGTTGTT
LOC_Os09g32020
Os.2319.1.S2_at--672--151Chr09:19114878..19114902 (25 bp)
ATTAGTCGCCTTGCTTGCGAAGCAA
LOC_Os09g32020
Os.2319.1.S2_at--1027--3111Chr09:19114852..19114872 (21 bp)
AATTTTTCCCATCCCAAGGAGCTTG
LOC_Os09g32020
Os.2319.1.S2_at--143--2071Chr09:19114577..19114601 (25 bp)
ACTTGCTGGAGTGCCCGTTGTAACG
NONE
Os.2319.1.S2_at--250--10591Chr09:19114492..19114516 (25 bp)
TTCTGACTTTGATTCGACACTTCGC
NONE
Os.2319.1.S2_at--101--9211Chr09:19114466..19114490 (25 bp)
TGCCACTGCGTTTCTCTTGTAATAA
NONE
Os.2319.1.S2_at--299--371NONE
ATAATTCGCATGTCAATTCCCTCAC
NONE
Target Sequence 
CATCATTTGTGATTGGGCCCAGTTTATCACATGAACTGTCTGTCACTGCTTCAGACATCCTTGGCTTACTTCAAGGTGAC
ACAGATAGATTCATCTCGTATGGGAGAATGGGATATGTTCACATCGACGATGTGGCGAGCTGCCACATTCTGGTGTACGA
AGCACCTCAGGCTACTGGGAGATATCTCTGCAACTCCGTTGTTCTTGACAACAACGAATTAGTCGCCTTGCTTGCGAAGC
AATTTCCAATTTTTCCCATCCCAAGGAGCTTGAGGAACCCATATGAGAAACAGTCATATGAGCTAAACACATCCAAGATC
CAGCAGCTGGGTTTCAAGTTCAAAGGGGTGCAAGAGATGTTTGGTGATTGTGTCGAGTCGCTGAAAGATCAGGGACACTT
GCTGGAGTGCCCGTTGTAACGAAAAAAAGGGATCTTTGGCACGGTACCAACAAGCTCATGGCCAAGCACACACTTGAATT
GTTCTGACTTTGATTCGACACTTCGCATGCCACTGCGTTTCTCTTGTAATAATTCGCATGTCAATTCCCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2319.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis