Browse Element(s) Details


Os.17721.1.S1_at

Description gb:AK065737.1
DB_XREF= gi:32975755
TID=Os.17721.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036E07, full insert sequence.
FL= gb:AK065737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3203011/11Iojap protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32030Os.17721.1.S1_at11/119+19118866..19120797Iojap protein, putative, expressed
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17721.1.S1_at--262--3651Chr09:19119445..19119465 (21 bp)
CTTCGGCGATGTTGTTGTCCATATA
LOC_Os09g32030
Os.17721.1.S1_at--808--7251Chr09:19119429..19119453 (25 bp)
GTCCATATATTTCTTCCGCAACAGC
LOC_Os09g32030
Os.17721.1.S1_at--283--2431Chr09:19119284..19119308 (25 bp)
AAAACCGAGCAGCATTGCGCCATGG
LOC_Os09g32030
Os.17721.1.S1_at--1094--7131Chr09:19119250..19119274 (25 bp)
GTCTTCCTGCTCATATGTGACGAAC
LOC_Os09g32030
Os.17721.1.S1_at--870--771Chr09:19119236..19119260 (25 bp)
ATGTGACGAACTGCTCGGAGCTATA
LOC_Os09g32030
Os.17721.1.S1_at--242--1271Chr09:19119212..19119236 (25 bp)
AGATTTGCATGGTCTAACTCGCCAA
LOC_Os09g32030
Os.17721.1.S1_at--527--9811Chr09:19119198..19119222 (25 bp)
TAACTCGCCAATGTCACCTGGTGAC
LOC_Os09g32030
Os.17721.1.S1_at--60--7371Chr09:19119178..19119202 (25 bp)
GTGACTGCTCGCCAAGTTCAGAAGT
LOC_Os09g32030
Os.17721.1.S1_at--565--711Chr09:19119145..19119169 (25 bp)
ATGATGCCAACATTCTCCTTATCTG
LOC_Os09g32030
Os.17721.1.S1_at--979--9491Chr09:19119132..19119156 (25 bp)
TCTCCTTATCTGTTGTTAGACTACG
LOC_Os09g32030
Os.17721.1.S1_at--41--7831Chr09:19118894..19118918 (25 bp)
GGTAAAATTACTTGGTCGAATCCTG
LOC_Os09g32030
Target Sequence 
CTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGANTTCTATGGCAACGCAA
CCTCCANTTGAACTCCNCTTTTGAGAAGCAGTTGCAGTGACTGCTGTTTTCATCTTCTCCTGGAGAAATTGCAGGTTTCC
ACAAAAACCGAGCAGCATTGCGCCATGGATTCTCCACGTCTTCCTGCTCATATGTGACGAACTGCTCGGAGCTATAGATT
TGCATGGTCTAACTCGCCAATGTCACCTGGTGACTGCTCGCCAAGTTCAGAAGTGGGGCACCATGATGCCAACATTCTCC
TTATCTGTTGTTAGACTACGTGAATCATTGTATTAACTATCACATTAGAGACGATAATTATTGGTGCCAAGAGGANTAGA
GGCCAAGATGTAACANANNNNNNCNNNNCNNNNNNNANANNNNANNANNNAGTGTGCAAGTTCNNNNNNNNNNNNNNNNN
NNNTGAAGGAATTTCAAGGGATCTTNNNNNNNTNNNNACTAAATTCTATCAAAATCCAGTAAAATTACTCCGCGGTAAAA
TTACTTGGTCGAATCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis