Browse Element(s) Details


OsAffx.7975.1.S1_at

Description tigr:9638.m03299
TID=OsAffx.7975.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3696611/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein
LOC_Os10g36980Os.17865.1.S1_at11/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.2.S1_x_at3/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.4.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980Os.46643.1.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.3.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7975.1.S1_at--117--5891Chr10:19478175..19478199 (25 bp)
GAGCGACGGCTCTTGGCGCCGACAA
LOC_Os10g36966
OsAffx.7975.1.S1_at--248--4831Chr10:19478167..19478191 (25 bp)
GCTCTTGGCGCCGACAAAGCAGAGG
LOC_Os10g36966
OsAffx.7975.1.S1_at--616--8351Chr10:19478130..19478154 (25 bp)
GGCGGCGAGGTGTCACCTCTTTCCC
LOC_Os10g36966
OsAffx.7975.1.S1_at--916--7151Chr10:19478056..19478080 (25 bp)
GTCTCCGGCGGATACTAGACCTCAA
LOC_Os10g36966
OsAffx.7975.1.S1_at--844--7931Chr10:19478047..19478071 (25 bp)
GGATACTAGACCTCAACGCGGATAC
LOC_Os10g36966
OsAffx.7975.1.S1_at--151--2611Chr10:19478033..19478057 (25 bp)
AACGCGGATACGACGGCACGCTTTG
LOC_Os10g36966
OsAffx.7975.1.S1_at--290--6491Chr10:19478027..19478051 (25 bp)
GATACGACGGCACGCTTTGCCTCAA
LOC_Os10g36966
OsAffx.7975.1.S1_at--974--1831Chr10:19478016..19478040 (25 bp)
ACGCTTTGCCTCAACGCGGTGGCGT
LOC_Os10g36966
OsAffx.7975.1.S1_at--684--5071Chr10:19477925..19477949 (25 bp)
GCAGCCGCCTCAATGATGCGGCCAA
LOC_Os10g36966
OsAffx.7975.1.S1_at--804--8251Chr10:19477906..19477930 (25 bp)
GGCCAACGACGCGACTACGGAGGAC
LOC_Os10g36966
OsAffx.7975.1.S1_at--503--8811Chr10:19477821..19477845 (25 bp)
TGTTGCCGCTGTTCTCGCCTGTCGC
LOC_Os10g36966
Target Sequence 
GAGCGACGGCTCTTGGCGCCGACAAAGCAGAGGGGCGGGGGACGCGGCGGCGAGGTGTCACCTCTTTCCCTCTCTCCGAC
CGGCCTCATCTCCCCAACTCCGCCCGGCCTCCTCTCCTCGTCTCCGGCGGATACTAGACCTCAACGCGGATACGACGGCA
CGCTTTGCCTCAACGCGGTGGCGTCGGTGTACCTGCAGTCCTGGACATGGCACATCAACGGGAGCCACGTGAACAAGACC
ACCGCGACGAGCAGCCGCCTCAATGATGCGGCCAACGACGCGACTACGGAGGACCACGGTGAGCACGCGCGGCCGCCGCC
GCTCTCCCCCATTGCCCTTGCCTGCTTCGCCCGCTGTTGCCGCTGTTCTCGCCTGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis