Browse Element(s) Details

Os.46643.1.S1_at

Description

gb:NM_197328.1
DB_XREF= gi:37536015
TID=Os.46643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46643 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBa0026L12.15), mRNA.
PROD=putative cytochrome P450
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g36960	11/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g36924	OsAffx.27508.100.S1_s_at	11/11	10	+	19448706..19455302	aquaporin NIP5.1, putative, expressed
LOC_Os10g36924	Os.46645.1.S1_at	11/11	10	+	19448706..19455302	aquaporin NIP5.1, putative, expressed
LOC_Os10g36924	OsAffx.20201.1.S1_at	10/11	10	+	19448706..19455302	aquaporin NIP5.1, putative, expressed
LOC_Os10g36924	OsAffx.20201.1.S1_x_at	10/11	10	+	19448706..19455302	aquaporin NIP5.1, putative, expressed
LOC_Os10g36924	Os.5393.1.S1_at	3/11	10	+	19448706..19455302	aquaporin NIP5.1, putative, expressed
LOC_Os10g36950	Os.11620.1.S1_a_at	11/11	10	+	19471354..19474102	IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960	Os.46643.1.S1_x_at	11/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	Os.46643.1.S1_at	11/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.2.S1_x_at	4/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.3.S1_x_at	2/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.1.S1_x_at	2/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.4.S1_x_at	1/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36966	OsAffx.7975.1.S1_at	11/11	10	+	19476908..19478454	hypothetical protein
LOC_Os10g36972	NA	NA	10	+	19479494..19479922	hypothetical protein
LOC_Os10g36980	Os.17865.1.S1_at	11/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	OsAffx.30695.2.S1_x_at	3/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	OsAffx.30695.4.S1_x_at	1/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	Os.46643.1.S1_x_at	1/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	OsAffx.30695.3.S1_x_at	1/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36984	NA	NA	10	+	19482711..19484390	hypothetical protein
LOC_Os10g36990	Os.35344.3.S1_x_at	11/11	10	+	19485516..19491690	transposon protein, putative, Mutator sub-class
LOC_Os10g36990	Os.35344.18.S1_x_at	10/11	10	+	19485516..19491690	transposon protein, putative, Mutator sub-class
LOC_Os10g36990	OsAffx.22940.5.S1_x_at	2/11	10	+	19485516..19491690	transposon protein, putative, Mutator sub-class
LOC_Os10g37010	OsAffx.13460.1.S1_at	2/11	10	+	19493697..19495523	hypothetical protein
LOC_Os10g37020	OsAffx.30695.4.S1_at	10/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	OsAffx.30695.4.S1_x_at	8/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	OsAffx.30695.2.S1_x_at	3/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	OsAffx.30695.3.S1_x_at	1/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	Os.46643.1.S1_x_at	1/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37034	Os.46592.1.S1_at	11/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	Os.46592.2.S1_x_at	9/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.2.S1_x_at	5/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.4.S1_x_at	5/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.4.S1_at	4/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.3.S1_x_at	2/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	Os.46643.1.S1_x_at	2/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.1.S1_x_at	1/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	Os.51397.1.S1_at	1/11	10	+	19499596..19503060	Cytochrome P450 family protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46643.1.S1_at--1006--645	1	Chr10:19475893..19475917 (25 bp)	GATCAAGGCCACGATGAGCGGCGAC	LOC_Os10g36960
Os.46643.1.S1_at--936--971	1	Chr10:19475931..19475955 (25 bp)	TCAACGAGGACGACGCCCGCAACAA	LOC_Os10g36960
Os.46643.1.S1_at--788--613	1	Chr10:19475984..19476008 (25 bp)	GAGGGTCTCAGGAAGCACCCGCCTA	LOC_Os10g36960
Os.46643.1.S1_at--170--107	1	Chr10:19475985..19476009 (25 bp)	AGGGTCTCAGGAAGCACCCGCCTAT	LOC_Os10g36960
Os.46643.1.S1_at--577--769	1	Chr10:19475986..19476010 (25 bp)	GGGTCTCAGGAAGCACCCGCCTATG	LOC_Os10g36960
Os.46643.1.S1_at--1133--715	1	Chr10:19475988..19476012 (25 bp)	GTCTCAGGAAGCACCCGCCTATGCA	LOC_Os10g36960
Os.46643.1.S1_at--969--817	1	Chr10:19475994..19476018 (25 bp)	GGAAGCACCCGCCTATGCACTTGCT	LOC_Os10g36960
Os.46643.1.S1_at--35--539	1	Chr10:19475995..19476019 (25 bp)	GAAGCACCCGCCTATGCACTTGCTG	LOC_Os10g36960
Os.46643.1.S1_at--226--447	1	Chr10:19476098..19476122 (25 bp)	GCCGAGATAGGCAGGGACGAGAAGG	LOC_Os10g36960
Os.46643.1.S1_at--1050--711	1	Chr10:19476374..19476395 (22 bp)	GTCATGGCAAAGTCGCTCCGCGGGA	LOC_Os10g36960
Os.46643.1.S1_at--347--963	1	Chr10:19476375..19476395 (21 bp)	TCATGGCAAAGTCGCTCCGCGGGAA	LOC_Os10g36960

Target Sequence

GATCAAGGCCACGATGAGCGGCGACAACGACGACGAGATCAACGAGGACGACGCCCGCAACAACCTCCCATACCTGAAGG
CCGTCATCCTCGAGGGTCTCAGGAAGCACCCGCCTATGCACTTGCTGCTCCCGCACAAGGCGGCCGAGGACGTCGAGGTC
GGCGGGTACCTCATCCCCAAGGGCGCCACGGTGAACTTCATGGTGGCCGAGATAGGCAGGGACGAGAAGGAGTGGGAGAA
GCCGACGGAGTTCATCCCGGAGCGGTTCATGGCCGGCGGCGGCGACGGGGAGGGCGTCGACGTGACCGGCAGCAGAGAGA
TCAGGATGATGCCGTTCGGCGCCGGGAGGAGGATCTGCGCCGCGCTCAGCGTCGCCATGCTGCACCTGGAGTACTTCGTG
GCGAACATGGTGAAGGAGTTCGAGTGGAAGGAGGTCGCCGGCGACGAGGTGGACTTCGCCGAGAGGCTCGAGTTCACCAC
CGTCATGGCAAAGTCGCTCCGCGGGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis