Browse Element(s) Details


Os.51397.1.S1_at

Description gb:AK062706.1
DB_XREF= gi:32972724
TID=Os.51397.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B08, full insert sequence.
FL= gb:AK062706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3615010/11hypothetical protein
LOC_Os10g370341/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36110Os.31380.1.A1_x_at11/113+19984903..19988342expressed protein
LOC_Os03g36110Os.23106.1.A1_at11/113+19984903..19988342expressed protein
LOC_Os03g36120NANA3+19993202..19995816retrotransposon protein, putative, unclassified
LOC_Os03g36130Os.52447.1.S1_x_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52447.1.S1_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52172.1.S1_x_at5/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36140NANA3+20003870..20005497retrotransposon protein, putative, unclassified
LOC_Os03g36150Os.51397.1.S1_at10/113+20008178..20012539hypothetical protein
LOC_Os03g36150Os.40855.4.S1_x_at1/113+20008178..20012539hypothetical protein
LOC_Os03g36160OsAffx.25376.1.S1_at11/113+20016308..20017186DnaJ domain containing protein, expressed
LOC_Os03g36170NANA3+20020269..20024659retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36180OsAffx.31892.1.S1_x_at1/113+20026892..20028086retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51397.1.S1_at--66--431Chr03:20012497..20012643 (25 bp)
ATCATAGCGTATCATATCCTCCGAG
NONE
Os.51397.1.S1_at--591--531Chr03:20012424..20012448 (25 bp)
ATCGCCGTATTTGAGGATGTTCTTT
LOC_Os03g36150
Os.51397.1.S1_at--95--6291Chr03:20012409..20012433 (25 bp)
GATGTTCTTTTCGTCTCGGATTCAA
LOC_Os03g36150
Os.51397.1.S1_at--26--7174Chr10:19502143..19502167 (25 bp)
GTCTCGGATTCAATCCAGCCGAAGG
LOC_Os10g37034
Os.51397.1.S1_at--1001--10231Chr03:20012331..20012355 (25 bp)
TTTGGCTTTGCCGTTTCAGTAGTTA
LOC_Os03g36150
Os.51397.1.S1_at--661--5971Chr03:20012248..20012272 (25 bp)
GAGAACAAGATCAATGGCTGCCATC
LOC_Os03g36150
Os.51397.1.S1_at--105--4331Chr03:20012192..20012216 (25 bp)
CCATGCACCATGTACAGATGCCGGT
LOC_Os03g36150
Os.51397.1.S1_at--364--6351Chr03:20012176..20012200 (25 bp)
GATGCCGGTGTAATCCGACACGGGA
LOC_Os03g36150
Os.51397.1.S1_at--60--8191Chr03:20012144..20012168 (25 bp)
GGAACCACAGGCAGTGCTCACAGCT
LOC_Os03g36150
Os.51397.1.S1_at--874--9691Chr03:20012127..20012151 (25 bp)
TCACAGCTCACACACGATCGAGATC
LOC_Os03g36150
Os.51397.1.S1_at--714--6391Chr03:20012112..20012136 (25 bp)
GATCGAGATCGCCAGCTACCATGAG
LOC_Os03g36150
Target Sequence 
ATCATAGCGTATCATATCCTCCGAGATAGAGGTGCGTCGAGTTTCNNNNNGACGAGTGCGATGNANCCAATCTNCGACAT
CGCCGTATTTGAGGATGTTCTTTTCGTCTCGGATTCAATCCAGCCGAAGGGATTAGTCNCGGCGATTTCATTGATTTAAT
CTTCAAAATCATTTGGCTTTGCCGTTTCAGTAGTTAGATTGTTTTATAACTGCAGATTAATTTTNCTGTTACTCTCTTGN
TTTTGTATGCCGACTGAGAACAAGATCAATGGCTGCCATCTCGGTGTGTCTGCCCAACACCTCGTGNTCCCCCATGCACC
ATGTACAGATGCCGGTGTAATCCGACACGGGAGTAACGNGGAACCACAGGCAGTGCTCACAGCTCACACACGATCGAGAT
CGCCAGCTACCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis