Browse Element(s) Details


Os.31380.1.A1_x_at

Description gb:AK107428.1
DB_XREF= gi:32992637
TID=Os.31380.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A04, full insert sequence.
FL= gb:AK107428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3611011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36060OsAffx.25374.1.S1_at10/113+19960248..19960553hypothetical protein
LOC_Os03g36070OsAffx.20927.4.S1_x_at9/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.20927.4.S1_at8/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.14776.1.S1_x_at1/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.29316.1.S1_x_at1/113+19968213..19970511hypothetical protein
LOC_Os03g36080OsAffx.13195.1.S1_at11/113+19973414..19974321expressed protein
LOC_Os03g36100NANA3+19981970..19982779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36110Os.31380.1.A1_x_at11/113+19984903..19988342expressed protein
LOC_Os03g36110Os.23106.1.A1_at11/113+19984903..19988342expressed protein
LOC_Os03g36120NANA3+19993202..19995816retrotransposon protein, putative, unclassified
LOC_Os03g36130Os.52447.1.S1_x_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52447.1.S1_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52172.1.S1_x_at5/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36140NANA3+20003870..20005497retrotransposon protein, putative, unclassified
LOC_Os03g36150Os.51397.1.S1_at10/113+20008178..20012539hypothetical protein
LOC_Os03g36150Os.40855.4.S1_x_at1/113+20008178..20012539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31380.1.A1_x_at--390--2491Chr03:19986147..19986171 (25 bp)
AACATGGTCTGTTCCTAATGGTGAA
LOC_Os03g36110
Os.31380.1.A1_x_at--190--791Chr03:19986055..19986079 (25 bp)
ATGTGTCAATGTACCTTCTGAGTAG
LOC_Os03g36110
Os.31380.1.A1_x_at--697--3551Chr03:19986004..19986028 (25 bp)
CATCTGCCCTATCTGTATGATTCTT
LOC_Os03g36110
Os.31380.1.A1_x_at--695--6571Chr03:19985986..19986010 (25 bp)
GATTCTTTTGCTTACTGTTGTTTTC
LOC_Os03g36110
Os.31380.1.A1_x_at--161--10491Chr03:19985925..19985949 (25 bp)
TTAACAAGTCCACCTCACAAGAAGT
LOC_Os03g36110
Os.31380.1.A1_x_at--110--9071Chr03:19985281..19985303 (23 bp)
TGCATATATTTCTCACGCTTCGCTT
LOC_Os03g36110
Os.31380.1.A1_x_at--991--1831Chr03:19985267..19985291 (25 bp)
ACGCTTCGCTTCTTCCAATGGTGTT
LOC_Os03g36110
Os.31380.1.A1_x_at--722--2971Chr03:19985251..19985275 (25 bp)
AATGGTGTTTCATCCTCACGATCTC
LOC_Os03g36110
Os.31380.1.A1_x_at--576--5271Chr03:19985117..19985141 (25 bp)
GAATGCATGAAGTTGATCTCCAGAA
LOC_Os03g36110
Os.31380.1.A1_x_at--1141--2091Chr03:19985071..19985095 (25 bp)
ACATCCTAAGTCTATTTCACCGAAT
LOC_Os03g36110
Os.31380.1.A1_x_at--348--3911Chr03:19985016..19985040 (25 bp)
CTGGTTGCTTTAGTTCTCATCATGA
LOC_Os03g36110
Target Sequence 
AACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTAGATTTCAGCCT
AAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTA
TGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCAC
AAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAA
TGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTA
GTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31380.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis