Browse Element(s) Details


OsAffx.13195.1.S1_at

Description tigr:9631.m03450
TID=OsAffx.13195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3608011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36050OsAffx.3613.1.S1_x_at1/113+19949947..19954992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36060OsAffx.25374.1.S1_at10/113+19960248..19960553hypothetical protein
LOC_Os03g36070OsAffx.20927.4.S1_x_at9/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.20927.4.S1_at8/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.14776.1.S1_x_at1/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.29316.1.S1_x_at1/113+19968213..19970511hypothetical protein
LOC_Os03g36080OsAffx.13195.1.S1_at11/113+19973414..19974321expressed protein
LOC_Os03g36100NANA3+19981970..19982779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36110Os.31380.1.A1_x_at11/113+19984903..19988342expressed protein
LOC_Os03g36110Os.23106.1.A1_at11/113+19984903..19988342expressed protein
LOC_Os03g36120NANA3+19993202..19995816retrotransposon protein, putative, unclassified
LOC_Os03g36130Os.52447.1.S1_x_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52447.1.S1_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52172.1.S1_x_at5/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13195.1.S1_at--1135--7591Chr03:19973863..19973887 (25 bp)
GGGAACTTCACGTCGGGCGGTGCCA
LOC_Os03g36080
OsAffx.13195.1.S1_at--844--7351Chr03:19973645..19973669 (25 bp)
GTGAACGTGATCGAACAGCCGCCGG
LOC_Os03g36080
OsAffx.13195.1.S1_at--686--2471Chr03:19973632..19973656 (25 bp)
AACAGCCGCCGGTTTGTCAAGAGAA
LOC_Os03g36080
OsAffx.13195.1.S1_at--64--2791Chr03:19973614..19973638 (25 bp)
AAGAGAAGCCGATGTACCACCTCGT
LOC_Os03g36080
OsAffx.13195.1.S1_at--95--9231Chr03:19973590..19973614 (25 bp)
TCCACGCTGAGCCAGTCTACGCGAT
LOC_Os03g36080
OsAffx.13195.1.S1_at--176--1151Chr03:19973577..19973601 (25 bp)
AGTCTACGCGATCCCTTTGGAAATA
LOC_Os03g36080
OsAffx.13195.1.S1_at--296--551Chr03:19973567..19973591 (25 bp)
ATCCCTTTGGAAATATCGAGCGAGA
LOC_Os03g36080
OsAffx.13195.1.S1_at--844--3151Chr03:19973539..19973563 (25 bp)
AATTGCAGTAGACCGGGCAGTGCCA
LOC_Os03g36080
OsAffx.13195.1.S1_at--869--7271Chr03:19973520..19973544 (25 bp)
GTGCCAGCGGGCTAAAGGTCTGATA
LOC_Os03g36080
OsAffx.13195.1.S1_at--1042--4831Chr03:19973510..19973534 (25 bp)
GCTAAAGGTCTGATATGCTGATGAT
LOC_Os03g36080
OsAffx.13195.1.S1_at--848--231Chr03:19973487..19973511 (25 bp)
ATATATATGCGTGTCGGTGTGATAA
LOC_Os03g36080
Target Sequence 
GGGAACTTCACGTCGGGCGGTGCCACGAGGCCAACGTGGGCGGGTGCGCGGACGTCGCGGTAGGCCGGTGTCGCGCCGCG
CGCGCCGACTGGTGCGGCGCGATCGGCATCGAGCGGTGCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGA
TCGATGCCGCGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGC
CGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAG
ATTAAATTGCAGTAGACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis