Browse Element(s) Details


Os.23106.1.A1_at

Description gb:AK101433.1
DB_XREF= gi:32986642
TID=Os.23106.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038L16, full insert sequence.
FL= gb:AK101433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3611011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36060OsAffx.25374.1.S1_at10/113+19960248..19960553hypothetical protein
LOC_Os03g36070OsAffx.20927.4.S1_x_at9/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.20927.4.S1_at8/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.14776.1.S1_x_at1/113+19968213..19970511hypothetical protein
LOC_Os03g36070OsAffx.29316.1.S1_x_at1/113+19968213..19970511hypothetical protein
LOC_Os03g36080OsAffx.13195.1.S1_at11/113+19973414..19974321expressed protein
LOC_Os03g36100NANA3+19981970..19982779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36110Os.31380.1.A1_x_at11/113+19984903..19988342expressed protein
LOC_Os03g36110Os.23106.1.A1_at11/113+19984903..19988342expressed protein
LOC_Os03g36120NANA3+19993202..19995816retrotransposon protein, putative, unclassified
LOC_Os03g36130Os.52447.1.S1_x_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52447.1.S1_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52172.1.S1_x_at5/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36140NANA3+20003870..20005497retrotransposon protein, putative, unclassified
LOC_Os03g36150Os.51397.1.S1_at10/113+20008178..20012539hypothetical protein
LOC_Os03g36150Os.40855.4.S1_x_at1/113+20008178..20012539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23106.1.A1_at--312--7511Chr03:19985571..19985595 (25 bp)
GTGGTATAGGCTTACGTGCAATTAA
LOC_Os03g36110
Os.23106.1.A1_at--1135--5551Chr03:19985533..19985557 (25 bp)
GAAAGGCTAAGGTTACTTGCACAAG
LOC_Os03g36110
Os.23106.1.A1_at--410--2071Chr03:19985519..19985543 (25 bp)
ACTTGCACAAGTTGAGGCTGCTGAA
LOC_Os03g36110
Os.23106.1.A1_at--882--3851Chr03:19985499..19985523 (25 bp)
CTGAAAAGCATGCAGCTACTGCCCA
LOC_Os03g36110
Os.23106.1.A1_at--1092--9891Chr03:19985483..19985507 (25 bp)
TACTGCCCAGGAGCGTGTTGATGCT
LOC_Os03g36110
Os.23106.1.A1_at--126--9131Chr03:19985459..19985483 (25 bp)
TGCGGAACAGCGAGCAGTAGCTATG
LOC_Os03g36110
Os.23106.1.A1_at--287--6951Chr03:19985443..19985467 (25 bp)
GTAGCTATGGAAGACCAAGTCCGCA
LOC_Os03g36110
Os.23106.1.A1_at--1128--2171Chr03:19985407..19985431 (25 bp)
ACAAATGCCCAGTTGCAAGTAGAGC
LOC_Os03g36110
Os.23106.1.A1_at--681--6951Chr03:19985389..19985413 (25 bp)
GTAGAGCAACAATCTCAACGTGATG
LOC_Os03g36110
Os.23106.1.A1_at--836--691Chr03:19985367..19985391 (25 bp)
ATGAGTTGAACTCCCAGAGAAGGAC
LOC_Os03g36110
Os.23106.1.A1_at--534--1491Chr03:19985289..19985313 (25 bp)
AGCAAATGGCCATATATTTCTCACG
LOC_Os03g36110
Target Sequence 
GTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAG
CATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGA
TGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACGTGATGAGTTGAACTCCCAGAGAAGGACAGTAGAGGGAC
AAGCTACAGATGTTGAANGAATGGTACAACAAAAACTTGATGAGCAAATGGCCATATATTTCTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23106.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis