Browse Element(s) Details


OsAffx.25376.1.S1_at

Description tigr:9631.m03459
TID=OsAffx.25376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dnaJ-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3616011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36120NANA3+19993202..19995816retrotransposon protein, putative, unclassified
LOC_Os03g36130Os.52447.1.S1_x_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52447.1.S1_at11/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36130Os.52172.1.S1_x_at5/113+19997422..20002222retrotransposon, putative, centromere-specific, expressed
LOC_Os03g36140NANA3+20003870..20005497retrotransposon protein, putative, unclassified
LOC_Os03g36150Os.51397.1.S1_at10/113+20008178..20012539hypothetical protein
LOC_Os03g36150Os.40855.4.S1_x_at1/113+20008178..20012539hypothetical protein
LOC_Os03g36160OsAffx.25376.1.S1_at11/113+20016308..20017186DnaJ domain containing protein, expressed
LOC_Os03g36170NANA3+20020269..20024659retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36180OsAffx.31892.1.S1_x_at1/113+20026892..20028086retrotransposon, putative, centromere-specific
LOC_Os03g36200OsAffx.25378.1.S1_at11/113+20037582..20038862hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25376.1.S1_at--970--6971Chr03:20016604..20016628 (25 bp)
GTACCGGAAGCTGTGCCTCCTGGTG
LOC_Os03g36160
OsAffx.25376.1.S1_at--546--7771Chr03:20016662..20016686 (25 bp)
GGTGCGTTCAAGCTCGTCCAGACAG
LOC_Os03g36160
OsAffx.25376.1.S1_at--1147--7431Chr03:20016748..20016772 (25 bp)
GTGTACGCTTCCGATGCGGGCAGAA
LOC_Os03g36160
OsAffx.25376.1.S1_at--865--1451Chr03:20016769..20016793 (25 bp)
AGAAGACCTGTTTCGTACCAAGCCT
LOC_Os03g36160
OsAffx.25376.1.S1_at--548--5791Chr03:20016856..20016880 (25 bp)
GACGCAGAGGCAACAACCACCAGGT
LOC_Os03g36160
OsAffx.25376.1.S1_at--579--5391Chr03:20016910..20016934 (25 bp)
GAAGCGACCTCAGGTCGTCCAGATG
LOC_Os03g36160
OsAffx.25376.1.S1_at--25--4371Chr03:20016982..20017006 (25 bp)
GCCACCGGTAGTGAAGCGACCATCA
LOC_Os03g36160
OsAffx.25376.1.S1_at--387--3031Chr03:20017020..20017044 (25 bp)
AATGCCAGTATTGCGGCGCGGCAAT
LOC_Os03g36160
OsAffx.25376.1.S1_at--506--2271Chr03:20017049..20017073 (25 bp)
AAATCTTTCCGCTGCATGAGCTGCC
LOC_Os03g36160
OsAffx.25376.1.S1_at--1009--2451Chr03:20017091..20017115 (25 bp)
AACAAGCCGGGCTATTCCGACAATG
LOC_Os03g36160
OsAffx.25376.1.S1_at--857--5211Chr03:20017118..20017142 (25 bp)
GAATACGACGACTATTACGCCAAAA
LOC_Os03g36160
Target Sequence 
GTACCGGAAGCTGTGCCTCCTGGTGCACCCCGACAAGAACACCTCCGCCGCCGCCGACGGTGCGTTCAAGCTCGTCCAGA
CAGCCTGGGACGTGCTGTCGACCAGGCATCCCCCGCCGGGGGCCACCGCCGCCGCCGCCTCGGTGTGTACGCTTCCGATG
CGGGCAGAAGACCTGTTTCGTACCAAGCCTACAGCCGCCGCGCCGGCGACGCCACCGGCGGCCAAGAGGCCTCCTGAACC
GCCACCGAAGACGACGCAGAGGCAACAACCACCAGGTCCTCCGCCAAAGCCGCAACCGAGCGCACCGAAGCGACCTCAGG
TCGTCCAGATGCGTCGGCCTGCTCCGGCAAAACAACAGCGGCCGACGATTCTGCCGCCGCCACCGGTAGTGAAGCGACCA
TCACCGACCAGGGGAAAATGCCAGTATTGCGGCGCGGCAATCTCCAAATCTTTCCGCTGCATGAGCTGCCACCGGAGCCC
AATGGACAACAAGCCGGGCTATTCCGACAATGACGAATACGACGACTATTACGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis