Browse Element(s) Details


Os.46503.1.S1_at

Description gb:AK070291.1
DB_XREF= gi:32980315
TID=Os.46503.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytosolic chaperonin, delta-subunit (OSJNBa0026L12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052I10, full insert sequence.
FL= gb:AK070291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3706011/11T-complex protein 1, delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37050OsAffx.30695.2.S1_x_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.2.S1_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050Os.46643.1.S1_x_at3/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.4.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.3.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.1.S1_x_at1/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37060Os.46503.1.S1_at11/1110+19510933..19512780T-complex protein 1, delta subunit, putative, expressed
LOC_Os10g37070OsAffx.30695.1.S1_x_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.1.S1_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.3.S1_x_at6/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.4.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30725.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070Os.46643.1.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37079NANA10+19522165..19522383hypothetical protein
LOC_Os10g37090Os.18362.1.S1_at8/1110+19524163..19526198expressed protein
LOC_Os10g37100OsAffx.30695.3.S1_x_at11/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.1.S1_x_at4/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.2.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.4.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100Os.46643.1.S1_x_at1/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37110Os.22726.1.A1_at9/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110Os.46643.1.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.2.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.4.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37120Os.46643.1.S1_x_at1/1110+19534604..19536163transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46503.1.S1_at--739--8851Chr10:19511508..19511532 (25 bp)
TGATCGACGAAGCTCAGCGCAGCCT
LOC_Os10g37060
Os.46503.1.S1_at--969--7491Chr10:19511424..19511448 (25 bp)
GTGGTGCTCCTGAGATCGAGATGTC
LOC_Os10g37060
Os.46503.1.S1_at--841--1211Chr10:19511356..19511380 (25 bp)
AGTTACTGCGTCAGGGAGTTCGCCG
LOC_Os10g37060
Os.46503.1.S1_at--963--7111Chr10:19511320..19511344 (25 bp)
GTCATCCCTTACACGTTGGCAGAGA
LOC_Os10g37060
Os.46503.1.S1_at--527--1471Chr10:19511298..19511322 (25 bp)
AGAATGCAGGGCTCGATCCCATCTC
LOC_Os10g37060
Os.46503.1.S1_at--133--7691Chr10:19511207..19511231 (25 bp)
GGGTCGGATCACGAACATCCTGGAG
LOC_Os10g37060
Os.46503.1.S1_at--974--971Chr10:19511184..19511208 (25 bp)
AGGAGAATGTCGTGCAGCCACTGCT
LOC_Os10g37060
Os.46503.1.S1_at--1111--7091Chr10:19511143..19511167 (25 bp)
GTCACGCTGGCCTGCGAGTGTGTTA
LOC_Os10g37060
Os.46503.1.S1_at--583--5631Chr10:19510995..19511019 (25 bp)
GACACCTTCTAAAGTGGCACGCTTT
LOC_Os10g37060
Os.46503.1.S1_at--206--7531Chr10:19510982..19511006 (25 bp)
GTGGCACGCTTTCGTTGATTCAGAT
LOC_Os10g37060
Os.46503.1.S1_at--867--10151Chr10:19510948..19510972 (25 bp)
TATCATGCATTCTCACAACTGTCAA
LOC_Os10g37060
Target Sequence 
TGATCGACGAAGCTCAGCGCAGCCTCCACGACGCATTCTGTGTGATCAGGTGCTTGGTGAACAAGAGGTTTCTGATCGCT
GGTGGTGGTGCTCCTGAGATCGAGATGTCGATGCAGCTGGCTGCTTGGGCGAAGGAGCTGAGAGGGATGGAGAGTTACTG
CGTCAGGGAGTTCGCCGAGGCGCTCGAGGTCATCCCTTACACGTTGGCAGAGAATGCAGGGCTCGATCCCATCTCCACTG
TCACCGAGCTCCGGAATCGCCATGCCAAGGGCGAGAAGAACGCCGGGATCAACGTGAGGAAGGGTCGGATCACGAACATC
CTGGAGGAGAATGTCGTGCAGCCACTGCTGGTGAGCACGAGCGCCGTCACGCTGGCCTGCGAGTGTGTTAGGATGATACT
GAAGATTGATGATATTGTCACCGTGAGGTAAGGTTAATTAATTATGTGGTGGCTGACCGTGCTGGCCTCTGCTCTATTTT
GTCTGTCATGTTATTTAGGAGATTTGATATTTTGACACCTTCTAAAGTGGCACGCTTTCGTTGATTCAGATGGTTCGAAA
TATCATGCATTCTCACAACTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis